当前解析结果
SmilChr04G002337| 统一新 Gene ID | SmilChr04G002337 |
|---|---|
| 名称 | SmilChr04G002337 |
| 描述 | F-box protein SKIP2-like |
| 染色体 / SeqID | Chr04 / NC_080390.1 |
| 坐标与链方向 | 37704936 - 37707034 / + |
| NCBI Gene ID | LOC131021474 |
|---|---|
| GeneID | 131021474 |
| locus_tag | - |
| NCBI Name | LOC131021474 |
| 原始查询 | SmilChr04G002337 |
| 来源 | GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | F-box protein SKIP2-like |
| 产物 | F-box protein SKIP2-like |
| Arabidopsis | AT1G47056 (VFB1)VIER F-box protein 1 [Source:NCBI gene (formerly Entrezgene);Acc:841121] identity=54.2; qcov=0.97; evalue=0; confidence=high |
| Rice | Os04g0505700 (OsFbox227)- identity=53.1; qcov=0.623; evalue=2.41e-110; confidence=high |
| GO | GO:0005515 (protein binding); GO:0019005 (SCF ubiquitin ligase complex); GO:0031146 (SCF-dependent proteasomal ubiquitin-dependent protein catabolic process) |
| KEGG | - |
| Pfam | PF00646 (F-box); PF12937 (F-box-like); PF13516 (LRR_6); PF25372 (LRR_FBXL15) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:131021474 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Nucleus | 细胞核 | 1.00000 | XP_057806653.1 |
| 2 | Chromosome | 染色体 | 0.00000 | XP_057806653.1 |
| 3 | Centromere | 着丝粒 | 0.00000 | XP_057806653.1 |
| 4 | Chromatin | 染色质 | 0.00000 | XP_057806653.1 |
| 5 | Telomere | 端粒 | 0.00000 | XP_057806653.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr4:37705342 |
TC |
T |
1bp_deletion | frameshift_variant | 1 | B85 |
Chr4:37705342 |
TC |
T |
1bp_deletion | CDS_variant | 1 | B85 |
Chr4:37705417 |
G |
A |
EMS_canonical_SNV | CDS_variant | 3 | B16,B9,C68 |
Chr4:37705548 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B47 |
Chr4:37705792 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | C59,C84 |
Chr4:37705892 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | A22 |
Chr4:37705913 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | A22 |
Chr4:37706592 |
AC |
A |
1bp_deletion | frameshift_variant | 1 | B134 |
Chr4:37706592 |
AC |
A |
1bp_deletion | CDS_variant | 1 | B134 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。
XP_057806653.1PF00646
F-box 53-83 aa
PF12937
F-box-like 53-83 aa
PF13516
LRR_6 143-164 aa
PF25372
LRR_FBXL15 283-447 aa
PF13516
LRR_6 335-346 aa
PF13516
LRR_6 402-422 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057806653.1 |
Pfam | PF00646 |
F-box | Domain | 53 | 83 | 2.8e-06 | 27.7 | F-box domain |
XP_057806653.1 |
Pfam | PF12937 |
F-box-like | Domain | 53 | 83 | 2.9e-06 | 27.7 | F-box-like |
XP_057806653.1 |
Pfam | PF13516 |
LRR_6 | Repeat | 143 | 164 | 1.1e-08 | 35.2 | Leucine Rich repeat |
XP_057806653.1 |
Pfam | PF25372 |
LRR_FBXL15 | Repeat | 283 | 447 | 2.3e-16 | 60.0 | F-box/LRR-repeat protein 15, leucine rich repeat domain |
XP_057806653.1 |
Pfam | PF13516 |
LRR_6 | Repeat | 335 | 346 | 1.1e-08 | 35.2 | Leucine Rich repeat |
XP_057806653.1 |
Pfam | PF13516 |
LRR_6 | Repeat | 402 | 422 | 1.1e-08 | 35.2 | Leucine Rich repeat |
每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。