Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr04G002347`

染色体: Chr04 坐标: 37861834-37865129 链方向: + 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr04G002347`
名称	SmilChr04G002347
描述	floral homeotic protein APETALA 2-like
染色体 / SeqID	Chr04 / NC_080390.1
坐标与链方向	37861834 - 37865129 / `+`

ID 对照

NCBI Gene ID	`LOC131021484`
GeneID	`131021484`
locus_tag	`-`
NCBI Name	`LOC131021484`
原始查询	`SmilChr04G002347`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	floral homeotic protein APETALA 2-like
产物	floral homeotic protein APETALA 2-like
Arabidopsis	`AT4G36920` (AP2) Integrase-type DNA-binding superfamily protein [Source:NCBI gene (formerly Entrezgene);Acc:829845] identity=59.2; qcov=1.05; evalue=4.12e-149; confidence=high
Rice	`Os04g0649100` (SHAT1) - identity=53.1; qcov=0.919; evalue=6.72e-107; confidence=high
GO	GO:0003677 (DNA binding); GO:0003700 (DNA-binding transcription factor activity); GO:0006355 (regulation of DNA-templated transcription)
KEGG	-
Pfam	PF00847 (AP2)
InterPro	-
eggNOG	-
NR	GeneID:131021484

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Nucleus	细胞核	1.00000	`XP_057806669.1`
2	Chromosome	染色体	0.00000	`XP_057806669.1`
3	Centromere	着丝粒	0.00000	`XP_057806669.1`
4	Chromatin	染色质	0.00000	`XP_057806669.1`
5	Telomere	端粒	0.00000	`XP_057806669.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr4:37862562`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	B40,C77
`Chr4:37862591`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B65
`Chr4:37862595`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	B59,B76
`Chr4:37862610`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B28
`Chr4:37862628`	`C`	`T`	EMS_canonical_SNV	CDS_variant	3	B33,B38,B39
`Chr4:37862672`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	C2,C44
`Chr4:37862839`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	B109,B46
`Chr4:37862850`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B65
`Chr4:37862862`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B41
`Chr4:37862889`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	B100,C85
`Chr4:37864328`	`C`	`T`	EMS_canonical_SNV	CDS_variant	3	B44,B59,B76
`Chr4:37864400`	`G`	`A`	EMS_canonical_SNV	CDS_variant	4	B109,B124,B46,B79

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057806669.1

476 aa

N

1

238

476

AP2

AP2

C

PF00847 AP2 153-201 aa PF00847 AP2 244-294 aa

XP_057806670.1

475 aa

N

1

238

475

AP2

AP2

C

PF00847 AP2 153-201 aa PF00847 AP2 244-294 aa

XP_057806671.1

472 aa

N

1

236

472

AP2

AP2

C

PF00847 AP2 153-201 aa PF00847 AP2 244-294 aa

XP_057806672.1

471 aa

N

1

236

471

AP2

AP2

C

PF00847 AP2 153-201 aa PF00847 AP2 244-294 aa

XP_057806673.1

460 aa

N

1

230

460

AP2

AP2

C

PF00847 AP2 153-201 aa PF00847 AP2 244-294 aa

XP_057806674.1

459 aa

N

1

230

459

AP2

AP2

C

PF00847 AP2 153-201 aa PF00847 AP2 244-294 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057806669.1`	Pfam	`PF00847`	AP2	Domain	153	201	1e-20	74.5	AP2 domain
`XP_057806669.1`	Pfam	`PF00847`	AP2	Domain	244	294	1e-20	74.5	AP2 domain
`XP_057806670.1`	Pfam	`PF00847`	AP2	Domain	153	201	1e-20	74.5	AP2 domain
`XP_057806670.1`	Pfam	`PF00847`	AP2	Domain	244	294	1e-20	74.5	AP2 domain
`XP_057806671.1`	Pfam	`PF00847`	AP2	Domain	153	201	9.8e-21	74.5	AP2 domain
`XP_057806671.1`	Pfam	`PF00847`	AP2	Domain	244	294	9.8e-21	74.5	AP2 domain
`XP_057806672.1`	Pfam	`PF00847`	AP2	Domain	153	201	9.8e-21	74.5	AP2 domain
`XP_057806672.1`	Pfam	`PF00847`	AP2	Domain	244	294	9.8e-21	74.5	AP2 domain
`XP_057806673.1`	Pfam	`PF00847`	AP2	Domain	153	201	9.1e-21	74.6	AP2 domain
`XP_057806673.1`	Pfam	`PF00847`	AP2	Domain	244	294	9.1e-21	74.6	AP2 domain
`XP_057806674.1`	Pfam	`PF00847`	AP2	Domain	153	201	9.1e-21	74.6	AP2 domain
`XP_057806674.1`	Pfam	`PF00847`	AP2	Domain	244	294	9.1e-21	74.6	AP2 domain

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

6 records

下载 cDNA FASTA

XM_057950687.1
AAAGAAAAGTAGTTCTCCCCACTCTAGGCTTAGCCCCCTCTATATTATACTTAGTCCTATTCTCTCTTTGAAACCTCAAAAGAGAAGGCAAGTTGCCTATATATCTAAATGAATGAATGAAGTCTAGAGAGAGAAAGAGGAGGGATAAAGAGAGAGAAGGGTGCTGCTTTCGGCCAATCCTTGAAAAACTGGCCTCGTCTATGCAGTATTGGGCAGCTAGCTAGGGATGGAGGGAGGATATGTAGACAAGAGAGAGAGAG...

XM_057950691.1
AGAAAAGTAGTTCTCCCCACTCTAGGCTTAGCCCCCTCTATATTATACTTAGTCCTATTCTCTCTTTGAAACCTCAAAAGAGAAGGCAAGTTGCCTATATATCTAAATGAATGAATGAAGTCTAGAGAGAGAAAGAGGAGGGATAAAGAGAGAGAAGGGTGCTGCTTTCGGCCAATCCTTGAAAAACTGGCCTCGTCTATGCAGTATTGGGCAGCTAGCTAGGGATGGAGGGAGGATATGTAGACAAGAGAGAGAGAGAG...

CDS

6 records

下载 CDS FASTA

LOC131021484
ATGTGGGATCTCAACGATTCGCCGGATCAAAGGAGGGACGACGAATCCGAGGGGTGCTCCGACGACAAGGGCAAGCGCGTTGGATCCATGTCGAATTCGAGCTCGTCGGCCGTGGTGGTGGAGGACGGCTCCGACGACGATGAGGCCGCCGCCGCCGCCCGGAAGCGGAGCAGCAAGATATTCGGCTTTTCTGTCTGCGAAGACGACGCCGATGACGACGACGCCGACGCCGGGCCGTGCTCCTCTCTCGTCACAAGGCA...

LOC131021484
ATGTGGGATCTCAACGATTCGCCGGATCAAAGGAGGGACGACGAATCCGAGGGGTGCTCCGACGACAAGGGCAAGCGCGTTGGATCCATGTCGAATTCGAGCTCGTCGGCCGTGGTGGTGGAGGACGGCTCCGACGACGATGAGGCCGCCGCCGCCGCCCGGAAGCGGAGCAGCAAGATATTCGGCTTTTCTGTCTGCGAAGACGACGCCGATGACGACGACGCCGACGCCGGGCCGTGCTCCTCTCTCGTCACAAGGCA...

Protein

6 records

下载 Protein FASTA

XP_057806669.1
MWDLNDSPDQRRDDESEGCSDDKGKRVGSMSNSSSSAVVVEDGSDDDEAAAAARKRSSKIFGFSVCEDDADDDDADAGPCSSLVTRQFFPVDDSEAAADGGGSAAFPRAHWVGVKFCQSEPHASAAAVFGKSAAEVAQPLKKSRRGPRSRSSQYRGVTFYRRTGRWESHIWDCGKQVYLGGFDTAHAAARAYDRAAIKFRGVEADINFSIEDYEDDLKQMSNLTKEEFVHVLRRQSTGFPRGSSKYRGVTLHKCGRWEAR...

XP_057806670.1
MWDLNDSPDQRRDDESEGCSDDKGKRVGSMSNSSSSAVVVEDGSDDDEAAAAARKRSSKIFGFSVCEDDADDDDADAGPCSSLVTRQFFPVDDSEAAADGGGSAAFPRAHWVGVKFCQSEPHASAAAVFGKSAAEVAQPLKKSRRGPRSRSSQYRGVTFYRRTGRWESHIWDCGKQVYLGGFDTAHAAARAYDRAAIKFRGVEADINFSIEDYEDDLKQMSNLTKEEFVHVLRRQSTGFPRGSSKYRGVTLHKCGRWEAR...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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