Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr04G002348`

染色体: Chr04 坐标: 37875108-37880823 链方向: - 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr04G002348`
名称	SmilChr04G002348
描述	filament-like plant protein 7
染色体 / SeqID	Chr04 / NC_080390.1
坐标与链方向	37875108 - 37880823 / `-`

ID 对照

NCBI Gene ID	`LOC131021485`
GeneID	`131021485`
locus_tag	`-`
NCBI Name	`LOC131021485`
原始查询	`SmilChr04G002348`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	filament-like plant protein 7
产物	filament-like plant protein 7
Arabidopsis	`AT2G23360` (AT2G23360) filament-like protein (DUF869) [Source:NCBI gene (formerly Entrezgene);Acc:816868] identity=40; qcov=0.697; evalue=3.56e-146; confidence=medium
Rice	`Os04g0649200` - identity=42.4; qcov=0.455; evalue=1.31e-87; confidence=medium
GO	-
KEGG	-
Pfam	PF05911 (FPP)
InterPro	-
eggNOG	-
NR	GeneID:131021485

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Cell membrane	细胞膜	0.80000	`XP_057806678.1`
2	Nucleus	细胞核	0.20000	`XP_057806675.1`
3	Cytoplasm	细胞质	0.20000	`XP_057806675.1`
4	Cytosol	细胞质基质	0.20000	`XP_057806675.1`
5	Chromosome	染色体	0.00000	`XP_057806675.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr4:37875334`	`C`	`CT`	1bp_insertion	frameshift_variant	2	B40,C77
`Chr4:37875334`	`C`	`CT`	1bp_insertion	CDS_variant	2	B40,C77
`Chr4:37875342`	`C`	`T`	EMS_canonical_SNV	CDS_variant	3	B124,B135,C37
`Chr4:37875590`	`G`	`A`	EMS_canonical_SNV	CDS_variant	3	B111,B47,C77
`Chr4:37875694`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	A1
`Chr4:37876313`	`C`	`T`	EMS_canonical_SNV	CDS_variant	3	B33,B38,B39
`Chr4:37876694`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	B115,B78
`Chr4:37876739`	`AT`	`A`	1bp_deletion	frameshift_variant	12	A4,A9,B105,B78,C19,C30,C31,C35,C45,C46,C53,C74
`Chr4:37876986`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	B124,B79
`Chr4:37877142`	`TC`	`T`	1bp_deletion	frameshift_variant	1	B37
`Chr4:37877142`	`TC`	`T`	1bp_deletion	CDS_variant	1	B37
`Chr4:37877145`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B37

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057806675.1

1098 aa

549

1098

FPP

PF05911 FPP 126-978 aa

XP_057806676.1

1055 aa

528

1055

FPP

PF05911 FPP 67-935 aa

XP_057806677.1

1055 aa

528

1055

FPP

PF05911 FPP 67-935 aa

XP_057806678.1

1053 aa

526

1053

FPP

PF05911 FPP 65-933 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057806675.1`	Pfam	`PF05911`	FPP	Coiled-coil	126	978	3.4e-213	711.2	Filament-like plant protein, long coiled-coil
`XP_057806676.1`	Pfam	`PF05911`	FPP	Coiled-coil	67	935	4.3e-221	737.4	Filament-like plant protein, long coiled-coil
`XP_057806677.1`	Pfam	`PF05911`	FPP	Coiled-coil	67	935	4.3e-221	737.4	Filament-like plant protein, long coiled-coil
`XP_057806678.1`	Pfam	`PF05911`	FPP	Coiled-coil	65	933	4.2e-221	737.4	Filament-like plant protein, long coiled-coil

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

4 records

下载 cDNA FASTA

XM_057950693.1
CATAAAGAAACACACACAGACACAGGAATCATGAATTATGATTTATATAATCAACAGCAACGCCGATGCCCGCTCTCCCCGTCCTTCGGGTTAAACCAACCCGCCCAAACTCCTTTTGCAACCAAGCCCGACCCGCCCAACACTCACATGTCAGATCCACTCCACAGAGACACAGCCTTTGCATATATGCACTATACAAAGCATTTGCTCCTCGTTTCTCGAAACTGCTCGGCTTGCTGTGCATTTTGCTCCAAGATATA...

XM_057950692.1
GAATTATGATTTATATAATCAACAGCAACGCCGATGCCCGCTCTCCCCGTCCTTCGGGTTAAACCAACCCGCCCAAACTCCTTTTGCAACCAAGCCCGACCCGCCCAACACTCACATGTCAGATCCACTCCACAGAGACACAGCCTTTGCATATATGCACTATACAAAGCATTTGCTCCTCGTTTCTCGAAACTGCTCGGCTTGCTGTGCATTTTGCTCCAAGATATAATGTGATCATCTGAATCTGAGCTGGAAGATTG...

CDS

4 records

下载 CDS FASTA

LOC131021485
ATGGATCAAAAGTCATGGCTTTGGAAGAAAAAATCTACTGAGAAAACTTTAGTAGCTGATAAAGCAAGCAATTCTTTGAGCAAAAACGAAGAAGAAGTAACTGAGAAGCTTACGATTGAGAAGACGGGTCTTGAAAAAGACATTCAGATATTAAATGAAAGGCTTTCGTCTACCCTATCTGATTGTATTGCCAAGGATAACATAGCGAAGAAACAGGTGAAAATTGCAGAGGAAGCTATTGCAGGCTGGGAGAAGGAAAA...

LOC131021485
ATGGATCAAAAGTCATGGCTTTGGAAGAAAAAATCTACTGAGAAAACTTTAGTAGCTGATAAAGCAAGCAATTCTTTGAGCAAAAACGAAGAAGAAGTAACTGAGTTGCAGAAGCTTACGATTGAGAAGACGGGTCTTGAAAAAGACATTCAGATATTAAATGAAAGGCTTTCGTCTACCCTATCTGATTGTATTGCCAAGGATAACATAGCGAAGAAACAGGTGAAAATTGCAGAGGAAGCTATTGCAGGCTGGGAGAA...

Protein

4 records

下载 Protein FASTA

XP_057806675.1
MDQKSWLWKKKSTEKTLVADKASNSLSKNEEEVTELQKLTIEKTGLEKDIQILNERLSSTLSDCIAKDNIAKKQVKIAEEAIAGDLLSNSILNIFSCPFRITHIHCAEKNFRTLMLSLSFHTFICLGWEKEKTEAIALKQELDKVLQQKASSEERVDHLDAALKECMHQLRFVREEQERRVHGALTKTSEEFEKIQSGLREQLVEACKKHAKLDAENARLSNTLSGKDKVIEDLGKYRSQLEADFNALLLRSECTEKENA...

XP_057806676.1
MDQKSWLWKKKSTEKTLVADKASNSLSKNEEEVTELQKLTIEKTGLEKDIQILNERLSSTLSDCIAKDNIAKKQVKIAEEAIAGWEKEKTEAIALKQELDKVLQQKASSEERVDHLDAALKECMHQLRFVREEQERRVHGALTKTSEEFEKIQSGLREQLVEACKKHAKLDAENARLSNTLSGKDKVIEDLGKYRSQLEADFNALLLRSECTEKENASLKYEVHVLEKELDIRSEEREFNRRIADVAQRHQQESAVKIAK...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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