当前解析结果
SmilChr04G002363| 统一新 Gene ID | SmilChr04G002363 |
|---|---|
| 名称 | SmilChr04G002363 |
| 描述 | 2-oxoglutarate-Fe(II) type oxidoreductase hxnY-like |
| 染色体 / SeqID | Chr04 / NC_080390.1 |
| 坐标与链方向 | 38116378 - 38122288 / + |
| NCBI Gene ID | LOC131021498 |
|---|---|
| GeneID | 131021498 |
| locus_tag | - |
| NCBI Name | LOC131021498 |
| 原始查询 | SmilChr04G002363 |
| 来源 | GFF basic annotation; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | 2-oxoglutarate-Fe(II) type oxidoreductase hxnY-like |
| 产物 | 2-oxoglutarate-Fe(II) type oxidoreductase hxnY-like |
| Arabidopsis | AT1G35190 (AT1G35190)2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein [Source:NCBI gene (formerly Entrezgene);Acc:840408] identity=60.7; qcov=0.94; evalue=3.02e-111; confidence=high |
| Rice | Os01g0188100- identity=58.7; qcov=0.947; evalue=1.84e-119; confidence=high |
| GO | - |
| KEGG | - |
| Pfam | PF03171 (2OG-FeII_Oxy); PF14226 (DIOX_N) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:131021498 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Cytosol | 细胞质基质 | 1.00000 | XP_057806690.1 |
| 2 | Cytoplasm | 细胞质 | 0.80000 | XP_057806690.1 |
| 3 | Nucleus | 细胞核 | 0.00000 | XP_057806690.1 |
| 4 | Chromosome | 染色体 | 0.00000 | XP_057806690.1 |
| 5 | Centromere | 着丝粒 | 0.00000 | XP_057806690.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr4:38116516 |
A |
AC |
1bp_insertion | frameshift_variant | 4 | A23,B130,B58,B69 |
Chr4:38116516 |
A |
AC |
1bp_insertion | CDS_variant | 4 | A23,B130,B58,B69 |
Chr4:38116518 |
G |
A |
EMS_canonical_SNV | CDS_variant | 4 | A23,B130,B58,B69 |
Chr4:38116616 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | C77 |
Chr4:38117678 |
G |
A |
EMS_canonical_SNV | stop_gained | 10 | A21,A7,B127,B21,B30,B35,B37,B55,C23,C58 |
Chr4:38118729 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B65 |
Chr4:38118736 |
C |
T |
EMS_canonical_SNV | CDS_variant | 3 | B100,B59,D10 |
Chr4:38118745 |
G |
A |
EMS_canonical_SNV | CDS_variant | 3 | B18,B76,C81 |
Chr4:38118746 |
G |
A |
EMS_canonical_SNV | CDS_variant | 3 | B100,B59,D10 |
Chr4:38118955 |
G |
A |
EMS_canonical_SNV | CDS_variant | 4 | A21,B1,B54,C35 |
Chr4:38120122 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | D11 |
Chr4:38120484 |
C |
T |
EMS_canonical_SNV | stop_gained | 80 | A13,A16,A18,A21,A6,B1,B10,B103,B109,B113,B115,B118,B119,B12,B122,B126,B13,B130,B134,B136,B139,B14,B15,B19,B20,B21,B25,B29,B35,B40,B41,B49,B5,B50,B51,B52,B57,B58,B71,B73,B75,B80,B82,B87,B92,B97,C1,C16,C17,C2,C20,C22,C23,C26,C27,C31,C36,C37,C4,C40,C44,C49,C58,C68,C69,C70,C71,C73,C75,C80,C82,C83,C86,D1,D11,D2,D4,D5,D7,D9 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。
XP_057806690.1PF14226
DIOX_N 22-138 aa
PF03171
2OG-FeII_Oxy 201-291 aa
XP_057806692.1PF14226
DIOX_N 22-138 aa
PF03171
2OG-FeII_Oxy 201-272 aa
XP_057806693.1PF14226
DIOX_N 22-138 aa
PF03171
2OG-FeII_Oxy 201-286 aa
XP_057806694.1PF14226
DIOX_N 22-138 aa
PF03171
2OG-FeII_Oxy 200-284 aa
XP_057806695.1PF14226
DIOX_N 22-138 aa
PF03171
2OG-FeII_Oxy 200-253 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057806690.1 |
Pfam | PF14226 |
DIOX_N | Family | 22 | 138 | 7.8e-34 | 117.6 | non-haem dioxygenase in morphine synthesis N-terminal |
XP_057806690.1 |
Pfam | PF03171 |
2OG-FeII_Oxy | Domain | 201 | 291 | 2.3e-23 | 83.1 | 2OG-Fe(II) oxygenase superfamily |
XP_057806692.1 |
Pfam | PF14226 |
DIOX_N | Family | 22 | 138 | 7.1e-34 | 117.7 | non-haem dioxygenase in morphine synthesis N-terminal |
XP_057806692.1 |
Pfam | PF03171 |
2OG-FeII_Oxy | Domain | 201 | 272 | 9.6e-10 | 39.4 | 2OG-Fe(II) oxygenase superfamily |
XP_057806693.1 |
Pfam | PF14226 |
DIOX_N | Family | 22 | 138 | 6e-34 | 117.9 | non-haem dioxygenase in morphine synthesis N-terminal |
XP_057806693.1 |
Pfam | PF03171 |
2OG-FeII_Oxy | Domain | 201 | 286 | 2.7e-20 | 73.3 | 2OG-Fe(II) oxygenase superfamily |
XP_057806694.1 |
Pfam | PF14226 |
DIOX_N | Family | 22 | 138 | 5.5e-34 | 118.0 | non-haem dioxygenase in morphine synthesis N-terminal |
XP_057806694.1 |
Pfam | PF03171 |
2OG-FeII_Oxy | Domain | 200 | 284 | 6.2e-20 | 72.1 | 2OG-Fe(II) oxygenase superfamily |
XP_057806695.1 |
Pfam | PF14226 |
DIOX_N | Family | 22 | 138 | 5.4e-34 | 118.1 | non-haem dioxygenase in morphine synthesis N-terminal |
XP_057806695.1 |
Pfam | PF03171 |
2OG-FeII_Oxy | Domain | 200 | 253 | 8.2e-07 | 30.0 | 2OG-Fe(II) oxygenase superfamily |
每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
5 records
下载 cDNA FASTA5 records
下载 CDS FASTA5 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。