当前解析结果
SmilChr04G002383| 统一新 Gene ID | SmilChr04G002383 |
|---|---|
| 名称 | SmilChr04G002383 |
| 描述 | probable receptor-like protein kinase At5g24010 |
| 染色体 / SeqID | Chr04 / NC_080390.1 |
| 坐标与链方向 | 38369075 - 38371801 / - |
| NCBI Gene ID | LOC131021516 |
|---|---|
| GeneID | 131021516 |
| locus_tag | - |
| NCBI Name | LOC131021516 |
| 原始查询 | SmilChr04G002383 |
| 来源 | GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | probable receptor-like protein kinase At5g24010 |
| 产物 | probable receptor-like protein kinase At5g24010 |
| Arabidopsis | AT2G23200 (AT2G23200)Protein kinase superfamily protein [Source:NCBI gene (formerly Entrezgene);Acc:816852] identity=42.9; qcov=0.966; evalue=8.31e-172; confidence=medium |
| Rice | Os06g0334300 (OsCrRLK1L14)- identity=44.8; qcov=0.938; evalue=3.76e-176; confidence=medium |
| GO | GO:0004714 (transmembrane receptor protein tyrosine kinase activity); GO:0005524 (ATP binding); GO:0005886 (plasma membrane); GO:0009506 (plasmodesma); GO:0046777 (protein autophosphorylation) |
| KEGG | - |
| Pfam | PF00069 (Pkinase); PF07714 (PK_Tyr_Ser-Thr); PF12819 (Malectin_like) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:131021516 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Cell membrane | 细胞膜 | 1.00000 | XP_057806728.1 |
| 2 | Nucleus | 细胞核 | 0.00000 | XP_057806728.1 |
| 3 | Chromosome | 染色体 | 0.00000 | XP_057806728.1 |
| 4 | Centromere | 着丝粒 | 0.00000 | XP_057806728.1 |
| 5 | Chromatin | 染色质 | 0.00000 | XP_057806728.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr4:38369323 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B42 |
Chr4:38369394 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B22 |
Chr4:38369408 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | C50 |
Chr4:38369677 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | D10 |
Chr4:38369720 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | C36 |
Chr4:38369752 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | B67,C36 |
Chr4:38369754 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | B67,C36 |
Chr4:38369813 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | C36,C82 |
Chr4:38370396 |
G |
A |
EMS_canonical_SNV | CDS_variant | 3 | B100,B42,B43 |
Chr4:38370493 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B104 |
Chr4:38370540 |
AT |
A |
1bp_deletion | frameshift_variant | 2 | B44,C18 |
Chr4:38370540 |
AT |
A |
1bp_deletion | CDS_variant | 2 | B44,C18 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。
XP_057806728.1PF12819
Malectin_like 65-304 aa
PF00069
Pkinase 406-617 aa
PF07714
PK_Tyr_Ser-Thr 408-611 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057806728.1 |
Pfam | PF12819 |
Malectin_like | Domain | 65 | 304 | 8.1e-16 | 58.9 | Malectin-like domain |
XP_057806728.1 |
Pfam | PF00069 |
Pkinase | Domain | 406 | 617 | 1.7e-40 | 139.8 | Protein kinase domain |
XP_057806728.1 |
Pfam | PF07714 |
PK_Tyr_Ser-Thr | Domain | 408 | 611 | 2e-45 | 155.8 | Protein tyrosine and serine/threonine kinase |
每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。