当前解析结果
SmilChr04G002397| 统一新 Gene ID | SmilChr04G002397 |
|---|---|
| 名称 | SmilChr04G002397 |
| 描述 | uncharacterized SmilChr04G002397 |
| 染色体 / SeqID | Chr04 / NC_080390.1 |
| 坐标与链方向 | 38524132 - 38527748 / - |
| NCBI Gene ID | LOC131021529 |
|---|---|
| GeneID | 131021529 |
| locus_tag | - |
| NCBI Name | LOC131021529 |
| 原始查询 | SmilChr04G002397 |
| 来源 | GFF basic annotation; NCBI GO GAF; Arabidopsis/Rice homolog |
|---|---|
| 描述 | hit=Os07g0150500; species=rice; confidence=low |
| 产物 | hit=Os07g0150500; species=rice; confidence=low |
| Arabidopsis | AT1G17210 (ILP1)IAP-like protein 1 [Source:NCBI gene (formerly Entrezgene);Acc:838292] identity=67.6; qcov=0.264; evalue=5.44e-11; confidence=weak |
| Rice | Os07g0150500- identity=59.5; qcov=0.636; evalue=6.95e-20; confidence=low |
| GO | GO:0005634 (nucleus) |
| KEGG | - |
| Pfam | - |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:131021529 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Nucleus | 细胞核 | 0.80000 | XP_057806739.1 |
| 2 | Cytoplasm | 细胞质 | 0.80000 | XP_057806739.1 |
| 3 | Chromosome | 染色体 | 0.00000 | XP_057806739.1 |
| 4 | Centromere | 着丝粒 | 0.00000 | XP_057806739.1 |
| 5 | Chromatin | 染色质 | 0.00000 | XP_057806739.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变;完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr4:38525819 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | B132,D4 |
Chr4:38525821 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B66 |
Chr4:38525850 |
CA |
C |
1bp_deletion | frameshift_variant | 2 | C72,D5 |
Chr4:38525850 |
CA |
C |
1bp_deletion | CDS_variant | 2 | C72,D5 |
Chr4:38525860 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | D10 |
Chr4:38525872 |
C |
T |
EMS_canonical_SNV | stop_gained | 6 | A20,A23,C24,C65,C78,C85 |
Chr4:38525873 |
C |
T |
EMS_canonical_SNV | stop_gained | 1 | A24 |
Chr4:38525873 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | A24 |
Chr4:38525880 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B101 |
Chr4:38525903 |
C |
T |
EMS_canonical_SNV | CDS_variant | 4 | A8,B102,B12,B55 |
Chr4:38525917 |
C |
T |
EMS_canonical_SNV | CDS_variant | 3 | A10,B125,C12 |
Chr4:38525923 |
C |
T |
EMS_canonical_SNV | stop_gained | 3 | B125,B140,C73 |
每个公开基因均提供参考注释对应的转录本序列;蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
4 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补,使最终 FASTA 为转录方向 5′→3′。