Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID,以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因,再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。
示例

当前解析结果

SmilChr04G002404

染色体: Chr04 坐标: 38576734-38627026 链方向: + 类型: protein_coding

基本信息

统一新 Gene IDSmilChr04G002404
名称SmilChr04G002404
描述peroxidase 51-like
染色体 / SeqIDChr04 / NC_080390.1
坐标与链方向38576734 - 38627026 / +

ID 对照

NCBI Gene IDLOC131021534
GeneID131021534
locus_tag-
NCBI NameLOC131021534
原始查询SmilChr04G002404

查看完整 ID 对照表

功能注释

来源GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述peroxidase 51-like
产物peroxidase 51-like
ArabidopsisAT4G37530 (AT4G37530)
Peroxidase superfamily protein [Source:NCBI gene (formerly Entrezgene);Acc:829908]
identity=68.5; qcov=0.957; evalue=4.49e-159; confidence=high
RiceOs07g0115300 (prx98)
-
identity=65.2; qcov=0.954; evalue=1.4e-146; confidence=high
GOGO:0004601 (peroxidase activity); GO:0005515 (protein binding); GO:0006914 (autophagy); GO:0006979 (response to oxidative stress); GO:0020037 (heme binding); GO:0042744 (hydrogen peroxide catabolic process); GO:0043231 (intracellular membrane-bounded organelle)
KEGG-
PfamPF00141 (peroxidase)
InterPro-
eggNOG-
NRGeneID:131021534

打开注释模块

亚细胞定位 Top 5

Rank定位位置中文ScoreProtein ID
1 Nucleus 细胞核 1.00000 XP_057806750.1
2 Cytoplasm 细胞质 1.00000 XP_057806750.1
3 Cytosol 细胞质基质 1.00000 XP_057806750.1
4 Secreted 分泌到胞外 0.80000 XP_057806753.1
5 Nucleoplasm 核质 0.80000 XP_057806750.1

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变;完整结果可进入 EMS 突变库继续筛选或下载。

位置 REF ALT 类型 影响 携带材料数 材料
Chr4:38576988 G GGA 2bp_insertion frameshift_variant 1 B41
Chr4:38576988 G GGA 2bp_insertion CDS_variant 1 B41
Chr4:38577016 T TG 1bp_insertion frameshift_variant 20 A13,A18,B11,B114,B28,B33,B8,B86,B90,B92,B93,B95,C31,C32,C4,C56,C59,C68,C84,D6
Chr4:38577043 C T EMS_canonical_SNV CDS_variant 3 B120,B62,C79
Chr4:38577082 G A EMS_canonical_SNV CDS_variant 4 A19,B27,B55,C23
Chr4:38577108 A AT 1bp_insertion frameshift_variant 53 A13,A16,A18,A19,A20,A7,B103,B106,B11,B114,B118,B126,B127,B133,B16,B21,B27,B28,B33,B34,B35,B37,B42,B43,B51,B55,B74,B8,B84,B86,B90,B92,B93,B95,C12,C15,C17,C20,C22,C23,C31,C32,C4,C51,C54,C56,C59,C62,C68,C70,C84,D1,D6
Chr4:38577462 G A EMS_canonical_SNV CDS_variant 2 B120,B62
Chr4:38577554 G A EMS_canonical_SNV CDS_variant 1 B50
Chr4:38577601 G A EMS_canonical_SNV CDS_variant 3 B79,B91,C53
Chr4:38577758 C CA 1bp_insertion frameshift_variant 6 B36,C3,C39,C7,D10,D4
Chr4:38590338 G A EMS_canonical_SNV CDS_variant 4 B105,B122,B24,C6
Chr4:38590515 C T EMS_canonical_SNV stop_gained 4 B122,B71,C60,C61

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan;位置为对应蛋白序列上的氨基酸坐标。

XP_057806753.1
325 aa
N
1
162
325
peroxidase
C
PF00141 peroxidase 36-289 aa
Protein ID 来源 结构域编号 结构域名称 类型 起始 aa 终止 aa E-value Score 说明
XP_057806753.1 Pfam PF00141 peroxidase Domain 36 289 7.3e-76 255.8 Peroxidase

cDNA / CDS / Protein 序列

下载基因组 DNA(仅基因区域)

每个公开基因均提供参考注释对应的转录本序列;蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

8 records

下载 cDNA FASTA
XR_009100979.1
CATATGCTTTCTTCTCTGTAGGACCTCGCGATACTCTCACCCAACTACGAAGAGGATTACAAAACTCTCTCTCTCTCATAGTAATATCTTTGAGCTAGCTATATATATCTGACTTCCCAGCAACAACAACACTAAGTTAGGTAGCTAGGTTATCGAGTTATATATACAGCATCAATTTTGTGACAGCAATATGTGTGGGTTTATGATTTTGATGATTTTGTTGTCGGGAACAGCCTCGGCGCAACTGAGTCAGAACTTCT...
XR_009100980.1
AAATATAATAATTTAGCATTTAGAATTTCGGATCTGGAATGCGGGCCGGGTCGGAGCGGACCCGTCGCATAGTGTGCGACGGTCGCACCCAAGATCAGCTGTATAAGTTTAGTAAAAGTGATGAATTATTAAATTTCGTCATTCTTGCCCCCACAAAACACCCATAACAAATACAGAATGATTAAGAGTTGTTTCTAACTTGAATTGGTCAAAATTGTTTTTATTTGTATGCCTCTAAAAAAATACCTAAAGATTTTATT...

CDS

4 records

下载 CDS FASTA
LOC131021534
ATGTGTGGGTTTATGATTTTGATGATTTTGTTGTCGGGAACAGCCTCGGCGCAACTGAGTCAGAACTTCTACGCTAACGTGTGCCCTGACGTGGAGAACATTGTGAAAAAAGCCGTCTCTGTTAAGTTCAGCCAGACCTTCGTCACTGTCCCGGCAACTATACGTCTCTTCTTCCATGATTGCTTCGTTTCGGGGTGTGATGCGTCGGTGATAGTGGCGTCGACGGCGGGGAATACGGCGGAGAAGGACCACCCCGATAA...
LOC131021534
ATGCACTCACAAAATGGAGGCAGTAATGAAGGTTTGCCTTCCCATAGTGCTATGGGGAACTTATCAGCTGTGGTTCCTCCAGTAATTCCTAGTACCGTTGGTAATTTAAGGGTTCCTGGAAGATCTGGCTCACGGCACCAGTCTTCACGCACCCGTGCAATACCAACTTCCAGATCTGGAGATACCACTGCTATTAACAATAGCCGACCTGAGCAGAGCAATTCACAGCCTTTCATGAACCAAATCCAGTCTGAGGTGGC...

Protein

4 records

下载 Protein FASTA
XP_057806750.1
MHSQNGGSNEGLPSHSAMGNLSAVVPPVIPSTVGNLRVPGRSGSRHQSSRTRAIPTSRSGDTTAINNSRPEQSNSQPFMNQIQSEVATSLAAAAAAELPCTVKLRIWPHNVTNPCLPLDLERCRLTIPHAVLCSEMGAHFSPCGRFLAVCVACVLPTSDADPGFHSQIHDDTGASTSPTRHPISAHRVMYELRIYSLEEATFGFVLASRAIRAAHCLTSIQFSPTLEHLLLAYGRRHSNLLKSVVIDGDTTVPIYTILEI...
XP_057806751.1
MHSQNGGSNEGLPSHSAMGNLSAVVPPVIPSTVGNLRVPGRSGSRHQSSRTRAIPTSRSGDTTAINNSRPEQSNSQPFMNQIQSEVATSLAAAAAAELPCTVKLRIWPHNVTNPCLPLDLERCRLTIPHAVLCSEMGAHFSPCGRFLAVCVACVLPTSDADPGFHSQIHDDTGASTSPTRHPISAHRVMYELRIYSLEEATFGFVLASRAIRAAHCLTSIQFSPTLEHLLLAYGRRHSNLLKSVVIDGDTTVPIYTILEI...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补,使最终 FASTA 为转录方向 5′→3′。

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