Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID,以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因,再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。
示例

当前解析结果

SmilChr04G002406

染色体: Chr04 坐标: 38602334-38609880 链方向: + 类型: protein_coding

基本信息

统一新 Gene IDSmilChr04G002406
名称SmilChr04G002406
描述uncharacterized SmilChr04G002406
染色体 / SeqIDChr04 / NC_080390.1
坐标与链方向38602334 - 38609880 / +

ID 对照

NCBI Gene IDLOC131021533
GeneID131021533
locus_tag-
NCBI NameLOC131021533
原始查询SmilChr04G002406

查看完整 ID 对照表

功能注释

来源GFF basic annotation; NCBI GO GAF; Arabidopsis/Rice homolog
描述Transducin family protein / WD-40 repeat family protein [Source:NCBI gene (formerly Entrezgene);Acc:839272]; symbol=AT1G04140; hit=AT1G04140; species=arabidopsis; confidence=high
产物Transducin family protein / WD-40 repeat family protein [Source:NCBI gene (formerly Entrezgene);Acc:839272]; symbol=AT1G04140; hit=AT1G04140; species=arabidopsis; confidence=high
ArabidopsisAT1G04140 (AT1G04140)
Transducin family protein / WD-40 repeat family protein [Source:NCBI gene (formerly Entrezgene);Acc:839272]
identity=48.5; qcov=1.08; evalue=9.74e-172; confidence=high
RiceOs09g0296900 (OsWD40-169)
-
identity=45.2; qcov=1.09; evalue=3.18e-143; confidence=high
GOGO:0005515 (protein binding); GO:0006914 (autophagy); GO:0043231 (intracellular membrane-bounded organelle)
KEGG-
Pfam-
InterPro-
eggNOG-
NRGeneID:131021533

打开注释模块

亚细胞定位 Top 5

Rank定位位置中文ScoreProtein ID
1 Nucleus 细胞核 1.00000 XP_057806745.1
2 Cytoplasm 细胞质 1.00000 XP_057806745.1
3 Cytosol 细胞质基质 1.00000 XP_057806745.1
4 Nucleoplasm 核质 0.60000 XP_057806745.1
5 Nuclear body 核内小体 0.20000 XP_057806745.1

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变;完整结果可进入 EMS 突变库继续筛选或下载。

位置 REF ALT 类型 影响 携带材料数 材料
Chr4:38606017 C T EMS_canonical_SNV CDS_variant 1 B22
Chr4:38606070 G A EMS_canonical_SNV CDS_variant 1 B22
Chr4:38606179 G A EMS_canonical_SNV CDS_variant 3 A10,B85,C50
Chr4:38606289 G A EMS_canonical_SNV CDS_variant 1 C6
Chr4:38606398 C T EMS_canonical_SNV stop_gained 14 A1,A10,A25,B23,B30,B37,B70,B85,C21,C50,C64,C66,C8,D6
Chr4:38606730 G GGA 2bp_insertion frameshift_variant 9 A22,B117,B125,B35,B7,C28,C41,C49,C6
Chr4:38606806 C T EMS_canonical_SNV CDS_variant 5 B122,B131,B54,C61,C68
Chr4:38606878 C T EMS_canonical_SNV stop_gained 6 B122,B71,C32,C60,C61,C68
Chr4:38606879 G A EMS_canonical_SNV CDS_variant 4 B105,B122,B24,B75
Chr4:38606934 C T EMS_canonical_SNV CDS_variant 3 C11,C23,C69
Chr4:38607038 G A EMS_canonical_SNV CDS_variant 1 C8
Chr4:38608447 C T EMS_canonical_SNV CDS_variant 1 C69

进入 EMS 突变库

预测功能结构域

当前发布数据中,此基因没有可展示的 Pfam 结构域命中。

进入结构域查询

cDNA / CDS / Protein 序列

下载基因组 DNA(仅基因区域)

每个公开基因均提供参考注释对应的转录本序列;蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

4 records

下载 cDNA FASTA
XM_057950765.1
GGGCCGGCCCTGGCTGTGGTAATGGCGGTGACAGAGGTGGCGCTTCATCTCTACGCGCCTCCGTCCCCCTCTCACCGTGCTTTCCTCTTCCTACACGCCCGAAGCTCCGTTATCAATCTCCATCGCCACCAAATTTCTGTTTCCGATCACCGGTTACTCCTCCTTCTCCGGCAATGGCCGCTTCATATCCGCCGGTGCCGCCGTTGGGACTCCAACGCTGAATCCTACAGCACCAAAGACTTCAATTCTGATGTTGCGGA...
XM_057950762.1
GGGCCGGCCCTGGCTGTGGTAATGGCGGTGACAGAGGTGGCGCTTCATCTCTACGCGCCTCCGTCCCCCTCTCACCGTGCTTTCCTCTTCCTACACGCCCGAAGCTCCGTTATCAATCTCCATCGCCACCAAATTTCTGTTTCCGATCACCGGTTACTCCTCCTTCTCCGGCAATGGCCGCTTCATATCCGCCGGTGCCGCCGTTGGGACTCCAACGCTGAATCCTACAGCACCAAAGACTTCAATTCTGATGTTGCGGA...

CDS

4 records

下载 CDS FASTA
LOC131021533
ATGTGGCATTACAACAAGGGAGGGGAGGCTTCCTCACCAACAATCATATTAAAGACTAGCCGTTCGCTCCGTGCTGTGCATTTCCACCCACACGCTGCACCATTTCTTTTAACTGCTGAGGTCAATGATCTTGACTCATCAGACCCTTCAATGACCCTTGCAACTTCGCGTGGCTACTTGCACTACCCTCCTCCTACTATATATTTGGCAGATGCACATTCCAATTATCGATCAAATTCAGGAAATGATGTTCCTGTCAT...
LOC131021533
ATGTGGCATTACAACAAGGGAGGGGAGGCTTCCTCACCAACAATCATATTAAAGACTAGCCGTTCGCTCCGTGCTGTGCATTTCCACCCACACGCTGCACCATTTCTTTTAACTGCTGAGGTCAATGATCTTGACTCATCAGACCCTTCAATGACCCTTGCAACTTCGCGTGGCTACTTGCACTACCCTCCTCCTACTATATATTTGGCAGATGCACATTCCAATTATCGATCAAATTCAGGAAATGATGTTCCTGTCAT...

Protein

4 records

下载 Protein FASTA
XP_057806745.1
MWHYNKGGEASSPTIILKTSRSLRAVHFHPHAAPFLLTAEVNDLDSSDPSMTLATSRGYLHYPPPTIYLADAHSNYRSNSGNDVPVMSVPFLIWPSISIGDGASQQSDVDMSSSASQQRVDTSASVRLLTYSTPSGQYELVLSPVESSSSTTQDERLNNFSTRETGNAVSEHAMDAMETDMPVEARSNQFFPFGDPANWELPFLQGWLIGQSQAGQRAMHSQNGGSNEGLPSHSAIGNLSAVVPPVIPSTVGNLRVPGRS...
XP_057806746.1
MWHYNKGGEASSPTIILKTSRSLRAVHFHPHAAPFLLTAEVNDLDSSDPSMTLATSRGYLHYPPPTIYLADAHSNYRSNSGNDVPVMSVPFLIWPSISIGDGASQQSDVDMSSSASQQRVDTSASVRLLTYSTPSGQYELVLSPVESSSSTTQDERLNNFSTRETGNAVSEHAMDAMETDMPVEARSNQFFPFGDPANWELPFLQGWLIGQSQAGQRAMHSQNGGSNEGLPSHSAIGNLSAVVPPVIPSTVGNLRVPGRS...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补,使最终 FASTA 为转录方向 5′→3′。

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JBrowse

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