Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr04G002414`

染色体: Chr04 坐标: 38756075-38759860 链方向: + 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr04G002414`
名称	SmilChr04G002414
描述	uncharacterized SmilChr04G002414
染色体 / SeqID	Chr04 / NC_080390.1
坐标与链方向	38756075 - 38759860 / `+`

ID 对照

NCBI Gene ID	`LOC131021541`
GeneID	`131021541`
locus_tag	`-`
NCBI Name	`LOC131021541`
原始查询	`SmilChr04G002414`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; KEGG smil; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	Acetamidase/Formamidase family protein [Source:NCBI gene (formerly Entrezgene);Acc:829911]; symbol=AT4G37560; hit=AT4G37560; species=arabidopsis; confidence=high
产物	Acetamidase/Formamidase family protein [Source:NCBI gene (formerly Entrezgene);Acc:829911]; symbol=AT4G37560; hit=AT4G37560; species=arabidopsis; confidence=high
Arabidopsis	`AT4G37560` (AT4G37560) Acetamidase/Formamidase family protein [Source:NCBI gene (formerly Entrezgene);Acc:829911] identity=78.8; qcov=1; evalue=0; confidence=high
Rice	`Os01g0764900` - identity=79.8; qcov=0.985; evalue=0; confidence=high
GO	GO:0016811 (hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in linear amides)
KEGG	smil00460 (Cyanoamino acid metabolism - Salvia miltiorrhiza (redroot sage)); smil00630 (Glyoxylate and dicarboxylate metabolism - Salvia miltiorrhiza (redroot sage)); smil00910 (Nitrogen metabolism - Salvia miltiorrhiza (redroot sage)); smil01100 (Metabolic pathways - Salvia miltiorrhiza (redroot sage)); smil01200 (Carbon metabolism - Salvia miltiorrhiza (redroot sage))
Pfam	PF03069 (FmdA_AmdA)
InterPro	-
eggNOG	-
NR	GeneID:131021541

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Cytosol	细胞质基质	1.00000	`XP_057806758.1`
2	Cytoplasm	细胞质	0.40000	`XP_057806758.1`
3	Nucleus	细胞核	0.00000	`XP_057806758.1`
4	Chromosome	染色体	0.00000	`XP_057806758.1`
5	Centromere	着丝粒	0.00000	`XP_057806758.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr4:38756524`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	C50
`Chr4:38758091`	`C`	`T`	EMS_canonical_SNV	stop_gained	7	A10,A7,B37,B85,C50,C81,D6
`Chr4:38758102`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B33
`Chr4:38758156`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	C32,C68
`Chr4:38758162`	`C`	`T`	EMS_canonical_SNV	CDS_variant	4	B83,C21,C29,C59
`Chr4:38758200`	`C`	`T`	EMS_canonical_SNV	CDS_variant	3	B109,B22,B30
`Chr4:38758603`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	C50
`Chr4:38758831`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B114
`Chr4:38758945`	`C`	`T`	EMS_canonical_SNV	CDS_variant	5	B115,B78,C2,C44,D11
`Chr4:38759446`	`G`	`A`	EMS_canonical_SNV	CDS_variant	3	B111,B20,B47
`Chr4:38759655`	`G`	`A`	EMS_canonical_SNV	CDS_variant	4	B124,B135,B58,C37

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057806758.1

452 aa

226

452

FmdA_AmdA

PF03069 FmdA_AmdA 12-412 aa

XP_057806759.1

452 aa

226

452

FmdA_AmdA

PF03069 FmdA_AmdA 12-412 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057806758.1`	Pfam	`PF03069`	FmdA_AmdA	Family	12	412	3.6e-170	566.6	Acetamidase/Formamidase family
`XP_057806759.1`	Pfam	`PF03069`	FmdA_AmdA	Family	12	412	1.3e-165	551.6	Acetamidase/Formamidase family

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

2 records

下载 cDNA FASTA

XM_057950776.1
GCTCGATCGACGGACATTCACACATGAAGCTAATTAAACTATATAGAGCTACACCGTTTAAATGGATCGATCATAAGCTACGCTTGTTTCTCTATTAATAGTTAATGATGAAATCAAAGTGTGAGTGGTATTGATATCTTGTCCGAGAAAAAGGTCGAGTACTACGTATCAAGCAATTAGTAGTGGTCCAATATTTCAAGAAAAAAAAATTGCATCGTGGCTGTCATTGTCAAAAGTTTCTTAGTGAAAAGAATAAATCA...

XM_057950775.1
ATATCTTGTCCGAGAAAAAGGTCGAGTACTACGTATCAAGCAATTAGTAGTGGTCCAATATTTCAAGAAAAAAAAATTGCATCGTGGCTGTCATTGTCAAAAGTTTCTTAGTGAAAAGAATAAATCAAGGTTCTAATGATTTAAGCTTGACTACCATATCGCCAAAACTGTATCCGATTCTATTCAAATGAGTAATCTTGGTGCTAGATTGGTTGTGCCTATCGATGTGAAGAAGAAGCCAAAGGAGCAAAAAGTTCCTC...

CDS

2 records

下载 CDS FASTA

LOC131021541
ATGAGTAATCTTGGTGCTAGATTGGTTGTGCCTATCGATGTGAAGAAGAAGCCAAAGGAGCAAAAAGTTCCTCTGCACAACCGGTGGCACCCTGCTATTCCTCCGGTGGCGGAGGTCCGCACCGGAGAACTTTTCAGGGTGGAGATGGTGGATTTCAGCGGCGGCGGCATCACCAAAGAGTACACCGCTCAAGACATCAAGTTTCAAGATCCTTCTATTGTTCATTATCTGAGTGGACCAATCAGAGTGGTGGATGCAGA...

LOC131021541
ATGGCCCCTCCAACTCCAAGACTAACAGTCCCAATAGACTTAAAGAAGAAGCCATGGCAGCAGAAGCTGCCACTTCACAACCGGTGGCACCCGGAGATACCGCCGGTTGTGGAGGTCGAAACCGGGGTCGTATTTAGGGTAGAGATGGTGGACTGGACAGCAGGGGCAATCTCAGATGACAACTCTGCAATTGATGTAAAAACATTAGACCTATCAGCTGTTCATTATCTGAGTGGACCAATCAGAGTGGTGGATGCAGA...

Protein

2 records

下载 Protein FASTA

XP_057806758.1
MAPPTPRLTVPIDLKKKPWQQKLPLHNRWHPEIPPVVEVETGVVFRVEMVDWTAGAISDDNSAIDVKTLDLSAVHYLSGPIRVVDAEGNPAKPGDLLAVEICNLGPLPGDEWGYTAIFDRENGGGFLTDHFPGAAKAIWYFEGIYAYSPHIPGVRFPGLTHPGIVGTAPSMELLNIWNERERQVEETGLHTFKLCEVLHSRPLANLPSTKGCVLGKIKEGSGEWERIAREAARTIPGRENGGNCDIKNLSRGSKVYLPVF...

XP_057806759.1
MSNLGARLVVPIDVKKKPKEQKVPLHNRWHPAIPPVAEVRTGELFRVEMVDFSGGGITKEYTAQDIKFQDPSIVHYLSGPIRVVDAEGNPAKPGDLLAVEICNLGPLPGDEWGYTAIFDRENGGGFLTDHFPGAAKAIWYFEGIYAYSPHIPGVRFPGLTHPGIVGTAPSMELLNIWNERERQVEETGLHTFKLCEVLHSRPLANLPSTKGCVLGKIKEGSGEWERIAREAARTIPGRENGGNCDIKNLSRGSKVYLPVF...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

下载 upstream 下载 downstream 下载 upstream + gene + downstream

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