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Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。
示例

当前解析结果

SmilChr04G002431

染色体: Chr04 坐标: 38950579-38954491 链方向: + 类型: protein_coding

基本信息

统一新 Gene IDSmilChr04G002431
名称SmilChr04G002431
描述adenylyl-sulfate kinase 3-like
染色体 / SeqIDChr04 / NC_080390.1
坐标与链方向38950579 - 38954491 / +

ID 对照

NCBI Gene IDLOC131021557
GeneID131021557
locus_tag-
NCBI NameLOC131021557
原始查询SmilChr04G002431

查看完整 ID 对照表

功能注释

来源GFF basic annotation; NCBI GO GAF; KEGG smil; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述adenylyl-sulfate kinase 3-like
产物adenylyl-sulfate kinase 3-like
ArabidopsisAT2G14750 (APK)
APS kinase [Source:NCBI gene (formerly Entrezgene);Acc:815963]
identity=67.6; qcov=0.781; evalue=4.01e-112; confidence=high
RiceOs03g0202001
-
identity=74.4; qcov=0.611; evalue=1.96e-101; confidence=high
GOGO:0000103 (sulfate assimilation); GO:0004020 (adenylylsulfate kinase activity); GO:0005524 (ATP binding)
KEGGsmil00230 (Purine metabolism - Salvia miltiorrhiza (redroot sage)); smil00920 (Sulfur metabolism - Salvia miltiorrhiza (redroot sage)); smil01100 (Metabolic pathways - Salvia miltiorrhiza (redroot sage)); smil01320 (Sulfur cycle - Salvia miltiorrhiza (redroot sage))
PfamPF01583 (APS_kinase); PF13671 (AAA_33)
InterPro-
eggNOG-
NRGeneID:131021557

打开注释模块

亚细胞定位 Top 5

Rank定位位置中文ScoreProtein ID
1 Chloroplast 叶绿体 1.00000 XP_057806773.1
2 Chloroplast stroma 叶绿体基质 0.80000 XP_057806785.1
3 Mitochondrion 线粒体 0.20000 XP_057806773.1
4 Nucleus 细胞核 0.00000 XP_057806785.1
5 Chromosome 染色体 0.00000 XP_057806785.1

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置 REF ALT 类型 影响 携带材料数 材料
Chr4:38951540 C T EMS_canonical_SNV CDS_variant 2 B22,C48
Chr4:38953695 CT C 1bp_deletion frameshift_variant 4 A23,B69,C59,C84
Chr4:38953695 CT C 1bp_deletion CDS_variant 4 A23,B69,C59,C84

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057806773.1
333 aa
N
1
166
333
APS_kinase
AAA_33
C
PF01583 APS_kinase 124-256 aa PF13671 AAA_33 127-239 aa
XP_057806775.1
333 aa
N
1
166
333
APS_kinase
AAA_33
C
PF01583 APS_kinase 124-256 aa PF13671 AAA_33 127-239 aa
XP_057806776.1
333 aa
N
1
166
333
APS_kinase
AAA_33
C
PF01583 APS_kinase 124-256 aa PF13671 AAA_33 127-239 aa
XP_057806777.1
333 aa
N
1
166
333
APS_kinase
AAA_33
C
PF01583 APS_kinase 124-256 aa PF13671 AAA_33 127-239 aa
XP_057806778.1
333 aa
N
1
166
333
APS_kinase
AAA_33
C
PF01583 APS_kinase 124-256 aa PF13671 AAA_33 127-239 aa
XP_057806779.1
333 aa
N
1
166
333
APS_kinase
AAA_33
C
PF01583 APS_kinase 124-256 aa PF13671 AAA_33 127-239 aa
XP_057806780.1
333 aa
N
1
166
333
APS_kinase
AAA_33
C
PF01583 APS_kinase 124-256 aa PF13671 AAA_33 127-239 aa
XP_057806781.1
330 aa
N
1
165
330
APS_kinase
AAA_33
C
PF01583 APS_kinase 121-253 aa PF13671 AAA_33 124-236 aa
XP_057806782.1
330 aa
N
1
165
330
APS_kinase
AAA_33
C
PF01583 APS_kinase 121-253 aa PF13671 AAA_33 124-236 aa
XP_057806783.1
330 aa
N
1
165
330
APS_kinase
AAA_33
C
PF01583 APS_kinase 121-253 aa PF13671 AAA_33 124-236 aa
XP_057806784.1
330 aa
N
1
165
330
APS_kinase
AAA_33
C
PF01583 APS_kinase 121-253 aa PF13671 AAA_33 124-236 aa
XP_057806785.1
302 aa
N
1
151
302
APS_kinase
AAA_33
C
PF01583 APS_kinase 124-273 aa PF13671 AAA_33 127-239 aa
XP_057806786.1
302 aa
N
1
151
302
APS_kinase
AAA_33
C
PF01583 APS_kinase 124-273 aa PF13671 AAA_33 127-239 aa
XP_057806787.1
299 aa
N
1
150
299
APS_kinase
AAA_33
C
PF01583 APS_kinase 121-270 aa PF13671 AAA_33 124-236 aa
XP_057806788.1
299 aa
N
1
150
299
APS_kinase
AAA_33
C
PF01583 APS_kinase 121-270 aa PF13671 AAA_33 124-236 aa
XP_057806789.1
299 aa
N
1
150
299
APS_kinase
AAA_33
C
PF01583 APS_kinase 121-270 aa PF13671 AAA_33 124-236 aa
XP_057806791.1
299 aa
N
1
150
299
APS_kinase
AAA_33
C
PF01583 APS_kinase 121-270 aa PF13671 AAA_33 124-236 aa
XP_057806792.1
288 aa
N
1
144
288
APS_kinase
AAA_33
C
PF01583 APS_kinase 121-269 aa PF13671 AAA_33 124-236 aa
Protein ID 来源 结构域编号 结构域名称 类型 起始 aa 终止 aa E-value Score 说明
XP_057806773.1 Pfam PF01583 APS_kinase Domain 124 256 3.5e-64 216.1 Adenylylsulphate kinase
XP_057806773.1 Pfam PF13671 AAA_33 Domain 127 239 2.7e-06 28.4 AAA domain
XP_057806775.1 Pfam PF01583 APS_kinase Domain 124 256 3.5e-64 216.1 Adenylylsulphate kinase
XP_057806775.1 Pfam PF13671 AAA_33 Domain 127 239 2.7e-06 28.4 AAA domain
XP_057806776.1 Pfam PF01583 APS_kinase Domain 124 256 3.5e-64 216.1 Adenylylsulphate kinase
XP_057806776.1 Pfam PF13671 AAA_33 Domain 127 239 2.7e-06 28.4 AAA domain
XP_057806777.1 Pfam PF01583 APS_kinase Domain 124 256 3.5e-64 216.1 Adenylylsulphate kinase
XP_057806777.1 Pfam PF13671 AAA_33 Domain 127 239 2.7e-06 28.4 AAA domain
XP_057806778.1 Pfam PF01583 APS_kinase Domain 124 256 3.5e-64 216.1 Adenylylsulphate kinase
XP_057806778.1 Pfam PF13671 AAA_33 Domain 127 239 2.7e-06 28.4 AAA domain
XP_057806779.1 Pfam PF01583 APS_kinase Domain 124 256 3.5e-64 216.1 Adenylylsulphate kinase
XP_057806779.1 Pfam PF13671 AAA_33 Domain 127 239 2.7e-06 28.4 AAA domain
XP_057806780.1 Pfam PF01583 APS_kinase Domain 124 256 3.5e-64 216.1 Adenylylsulphate kinase
XP_057806780.1 Pfam PF13671 AAA_33 Domain 127 239 2.7e-06 28.4 AAA domain
XP_057806781.1 Pfam PF01583 APS_kinase Domain 121 253 3.3e-64 216.2 Adenylylsulphate kinase
XP_057806781.1 Pfam PF13671 AAA_33 Domain 124 236 2.7e-06 28.5 AAA domain
XP_057806782.1 Pfam PF01583 APS_kinase Domain 121 253 3.3e-64 216.2 Adenylylsulphate kinase
XP_057806782.1 Pfam PF13671 AAA_33 Domain 124 236 2.7e-06 28.5 AAA domain
XP_057806783.1 Pfam PF01583 APS_kinase Domain 121 253 3.3e-64 216.2 Adenylylsulphate kinase
XP_057806783.1 Pfam PF13671 AAA_33 Domain 124 236 2.7e-06 28.5 AAA domain
XP_057806784.1 Pfam PF01583 APS_kinase Domain 121 253 3.3e-64 216.2 Adenylylsulphate kinase
XP_057806784.1 Pfam PF13671 AAA_33 Domain 124 236 2.7e-06 28.5 AAA domain
XP_057806785.1 Pfam PF01583 APS_kinase Domain 124 273 5.2e-69 231.8 Adenylylsulphate kinase
XP_057806785.1 Pfam PF13671 AAA_33 Domain 127 239 2.2e-06 28.7 AAA domain
XP_057806786.1 Pfam PF01583 APS_kinase Domain 124 273 5.2e-69 231.8 Adenylylsulphate kinase
XP_057806786.1 Pfam PF13671 AAA_33 Domain 127 239 2.2e-06 28.7 AAA domain
XP_057806787.1 Pfam PF01583 APS_kinase Domain 121 270 4.9e-69 231.9 Adenylylsulphate kinase
XP_057806787.1 Pfam PF13671 AAA_33 Domain 124 236 2.2e-06 28.8 AAA domain
XP_057806788.1 Pfam PF01583 APS_kinase Domain 121 270 4.9e-69 231.9 Adenylylsulphate kinase
XP_057806788.1 Pfam PF13671 AAA_33 Domain 124 236 2.2e-06 28.8 AAA domain
XP_057806789.1 Pfam PF01583 APS_kinase Domain 121 270 4.9e-69 231.9 Adenylylsulphate kinase
XP_057806789.1 Pfam PF13671 AAA_33 Domain 124 236 2.2e-06 28.8 AAA domain
XP_057806791.1 Pfam PF01583 APS_kinase Domain 121 270 4.9e-69 231.9 Adenylylsulphate kinase
XP_057806791.1 Pfam PF13671 AAA_33 Domain 124 236 2.2e-06 28.8 AAA domain
XP_057806792.1 Pfam PF01583 APS_kinase Domain 121 269 1.3e-68 230.5 Adenylylsulphate kinase
XP_057806792.1 Pfam PF13671 AAA_33 Domain 124 236 2e-06 28.9 AAA domain

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

18 records

下载 cDNA FASTA
XM_057950796.1
ATCCAATTCGAAATTTTCAATTCTAAACTCGAGTTGGCGATCTATTCGAATCCATGATCCATCTACCAATTTCGAGTTGGACGTCTGTGCGGAATAATTTCATTTGACTCTTTCATCGTTTACCTTGACTCATATTTTAAGGCAGGAAATTGACTAGGTGGATTTTGTAATTGGGAATTTGAGGGCAAAAAAGAGGTTTAATGGCGGCGGTGGCTACTCAGGCGTTCAGTTTCTGTAAGCTGTCGAGGTCATTACGCGCC...
XM_057950797.1
AATTTTCAATTCTAAACTCGAGTTGGCGATCTATTCGAATCCATGATCCATCTACCAATTTCGAGTTGGACGTCTGTGCGGAATAATTTCATTTGACTCTTTCATCGTTTACCTTGACTCATATTTTAAGGAAATTGACTAGGTGGATTTTGTAATTGGGAATTTGAGGGCAAAAAAGAGGTTTAATGGCGGCGGTGGCTACTCAGGCGTTCAGTTTCTGTAAGCTGTCGAGGTCATTACGCGCCAAGCCAACGACACCT...

CDS

18 records

下载 CDS FASTA
LOC131021557
ATGGCGGCGGTGGCTACTCAGGCGTTCAGTTTCTGTAAGCTGTCGAGGTCATTACGCGCCAAGCCAACGACACCTTCGAAGGCGGCGGTGTTTCAGACCGGAGGTAGGAAACTGGAGACTTGCGGCGGCGGCGCTGCGAGATCGAGATTCGTGTCGCCAATCAGGGCAATGGAAGCCTCCGATGCGGCGAAGCACGCCAACGGCGCGGCAAATCAATCTATGGTTGATTCCGCTGGCGGAAATTGCGGCGGTTTTTCCGG...
LOC131021557
ATGGCGGCGGTGGCTACTCAGGCGTTCAGTTTCTGTAAGCTGTCGAGGTCATTACGCGCCAAGCCAACGACACCTTCGAAGGCGGCGGTGTTTCAGACCGGAGGTAGGAAACTGGAGACTTGCGGCGGCGGCGCTGCGAGATCGAGATTCGTGTCGCCAATCAGGGCAATGGAAGCCTCCGATGCGGCGAAGCACGCCAACGGCGCGGCAAATCAATCTATGGTTGATTCCGCTGGCGGAAATTGCGGCGGTTTTTCCGG...

Protein

18 records

下载 Protein FASTA
XP_057806773.1
MAAVATQAFSFCKLSRSLRAKPTTPSKAAVFQTGGRKLETCGGGAARSRFVSPIRAMEASDAAKHANGAANQSMVDSAGGNCGGFSGISWKNTVEVATVGSSTNIAWHKCSVEKCDREEMLNQKGCVIWITGLSGSGKSTVACALSRALHARGKLSYILDGDNCRHGLNRDLSFKADDRSENIRRIGEVAKLFADAGVICIASLISPFRKERDACRDLLPKGDFIEVYMDVPLQVCETRDPKGLYKLARAGKIKDILNFH...
XP_057806775.1
MAAVATQAFSFCKLSRSLRAKPTTPSKAAVFQTGGRKLETCGGGAARSRFVSPIRAMEASDAAKHANGAANQSMVDSAGGNCGGFSGISWKNTVEVATVGSSTNIAWHKCSVEKCDREEMLNQKGCVIWITGLSGSGKSTVACALSRALHARGKLSYILDGDNCRHGLNRDLSFKADDRSENIRRIGEVAKLFADAGVICIASLISPFRKERDACRDLLPKGDFIEVYMDVPLQVCETRDPKGLYKLARAGKIKDILNFH...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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