Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr04G002464`

染色体: Chr04 坐标: 39473583-39481003 链方向: + 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr04G002464`
名称	SmilChr04G002464
描述	uncharacterized SmilChr04G002464
染色体 / SeqID	Chr04 / NC_080390.1
坐标与链方向	39473583 - 39481003 / `+`

ID 对照

NCBI Gene ID	`LOC131021593`
GeneID	`131021593`
locus_tag	`-`
NCBI Name	`LOC131021593`
原始查询	`SmilChr04G002464`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; KEGG smil; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	embryo defective 2423 [Source:NCBI gene (formerly Entrezgene);Acc:824006]; symbol=EMB2423; hit=AT3G48470; species=arabidopsis; confidence=high
产物	embryo defective 2423 [Source:NCBI gene (formerly Entrezgene);Acc:824006]; symbol=EMB2423; hit=AT3G48470; species=arabidopsis; confidence=high
Arabidopsis	`AT3G48470` (EMB2423) embryo defective 2423 [Source:NCBI gene (formerly Entrezgene);Acc:824006] identity=52.8; qcov=1.01; evalue=0; confidence=high
Rice	`Os02g0598800` - identity=48.3; qcov=0.947; evalue=0; confidence=high
GO	GO:0005829 (cytosol); GO:0007004 (telomere maintenance via telomerase); GO:0042162 (telomeric repeat DNA binding); GO:0050821 (protein stabilization); GO:0051879 (Hsp90 protein binding); GO:0070209 (GO:0070209)
KEGG	smil03460 (Fanconi anemia pathway - Salvia miltiorrhiza (redroot sage)); smil04142 (Lysosome biogenesis - Salvia miltiorrhiza (redroot sage))
Pfam	PF10193 (Telomere_reg-2); PF25320 (TELO2_ARM)
InterPro	-
eggNOG	-
NR	GeneID:131021593

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Nucleus	细胞核	1.00000	`XP_057806839.1`
2	Nucleus membrane	核膜	0.20000	`XP_057806839.1`
3	Cytoplasm	细胞质	0.20000	`XP_057806839.1`
4	Chromosome	染色体	0.00000	`XP_057806839.1`
5	Centromere	着丝粒	0.00000	`XP_057806839.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr4:39474159`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	C8
`Chr4:39474512`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B128
`Chr4:39476255`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	D10
`Chr4:39476311`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	B59,C81
`Chr4:39476357`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	C14
`Chr4:39476833`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	C29
`Chr4:39477150`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	B59,C81
`Chr4:39477212`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B101
`Chr4:39478028`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	B3,C13
`Chr4:39478700`	`G`	`A`	EMS_canonical_SNV	CDS_variant	4	B128,B131,B51,B69
`Chr4:39478846`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	C39
`Chr4:39479001`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	D10

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057806839.1

1012 aa

506

1012

TELO2_ARM

Telomere_reg-2

PF25320 TELO2_ARM 277-517 aa PF10193 Telomere_reg-2 632-743 aa

XP_057806840.1

1012 aa

506

1012

TELO2_ARM

Telomere_reg-2

PF25320 TELO2_ARM 277-517 aa PF10193 Telomere_reg-2 632-743 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057806839.1`	Pfam	`PF25320`	TELO2_ARM	Repeat	277	517	4.5e-115	383.9	TELO2 ARM repeat domain
`XP_057806839.1`	Pfam	`PF10193`	Telomere_reg-2	Family	632	743	1.1e-21	78.0	Telomere length regulation protein
`XP_057806840.1`	Pfam	`PF25320`	TELO2_ARM	Repeat	277	517	4.5e-115	383.9	TELO2 ARM repeat domain
`XP_057806840.1`	Pfam	`PF10193`	Telomere_reg-2	Family	632	743	1.1e-21	78.0	Telomere length regulation protein

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

2 records

下载 cDNA FASTA

XM_057950856.1
TAAGGAGTAAAATGGGGGCTATGAATAGAACCACCCTAAAATTAATCGGGTTAAGAGCCCAAAATATGAAAGCCCACATTAAATATGCAAACGCCGCTCATCGGCTATGTTCTTCGCTCGCTATTTCTGCCTTCTAAACGAGCTTCAGCTTCTTCATGTATGATTGGACATGCCCTCATTCAGCGCAGTGTAGCTTCCGTGATTACTACTTTTGACTTGCTATGGCCATTGGAGGAGAAGAATCAGCTGAGAAGAAAAGG...

XM_057950857.1
ATGGTAATTCTCCTTTCTTTCCTTTCTATTTCTTCAATTCATCAAGAATTTGGGCTTAAATGTAATATTTCAAAGATTGAAAAGGTGTTTGCGTTTTCAACAGTCGAAACGCAAATTATGATTGGACATGCCCTCATTCAGCGCAGTGTAGCTTCCGTGATTACTACTTTTGACTTGCTATGGCCATTGGAGGAGAAGAATCAGCTGAGAAGAAAAGGACAGAACTTGAGAGAAGAGTACTGGAGCGAGTGGGACACGTC...

CDS

2 records

下载 CDS FASTA

LOC131021593
ATGGCCATTGGAGGAGAAGAATCAGCTGAGAAGAAAAGGACAGAACTTGAGAGAAGAGTACTGGAGCGAGTGGGACACGTCATCTCCTCCATTGATCACGCCAAGCACGTCGACCAAGTTATCGTAGCTCTCCACTCTCTGGCCGTCTGCCTATTCACCCTCAATCCCGATTCTATTTCAGGTAGTGTTGATGAGAAATATCGAGAAGAGTTAAGCGCCATAGAGGTTCCTAGCCAAGATGAGAAAACTGAATGGTGGCG...

Protein

2 records

下载 Protein FASTA

XP_057806839.1
MAIGGEESAEKKRTELERRVLERVGHVISSIDHAKHVDQVIVALHSLAVCLFTLNPDSISGSVDEKYREELSAIEVPSQDEKTEWWRVFYKGSGFRVFARVLLYDVASNWLACFPASARKHVYDAFFLDGCATEIVQVVVPCLQPGESGSYDSTAVISNAERLLVICLLENDLVRQMTREFSGDCDFEDASHEQVKKSISAASQLITSIPDKARRGAPASLSPRVFFKKLTSQLLHGVEEWDLKFVDESVVAYNNHVNGI...

XP_057806840.1
MAIGGEESAEKKRTELERRVLERVGHVISSIDHAKHVDQVIVALHSLAVCLFTLNPDSISGSVDEKYREELSAIEVPSQDEKTEWWRVFYKGSGFRVFARVLLYDVASNWLACFPASARKHVYDAFFLDGCATEIVQVVVPCLQPGESGSYDSTAVISNAERLLVICLLENDLVRQMTREFSGDCDFEDASHEQVKKSISAASQLITSIPDKARRGAPASLSPRVFFKKLTSQLLHGVEEWDLKFVDESVVAYNNHVNGI...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

下载 upstream 下载 downstream 下载 upstream + gene + downstream

JBrowse

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