Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID,以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因,再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。
示例

当前解析结果

SmilChr04G002481

染色体: Chr04 坐标: 39659148-39660958 链方向: - 类型: protein_coding

基本信息

统一新 Gene IDSmilChr04G002481
名称SmilChr04G002481
描述uncharacterized SmilChr04G002481
染色体 / SeqIDChr04 / NC_080390.1
坐标与链方向39659148 - 39660958 / -

ID 对照

NCBI Gene IDLOC131023422
GeneID131023422
locus_tag-
NCBI NameLOC131023422
原始查询SmilChr04G002481

查看完整 ID 对照表

功能注释

来源GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述hAT dimerization domain-containing protein / transposase-like protein [Source:NCBI gene (formerly Entrezgene);Acc:833333]; symbol=AT5G33406; hit=AT5G33406; species=arabidopsis; confidence=high
产物hAT dimerization domain-containing protein / transposase-like protein [Source:NCBI gene (formerly Entrezgene);Acc:833333]; symbol=AT5G33406; hit=AT5G33406; species=arabidopsis; confidence=high
ArabidopsisAT5G33406 (AT5G33406)
hAT dimerization domain-containing protein / transposase-like protein [Source:NCBI gene (formerly Entrezgene);Acc:833333]
identity=63.9; qcov=0.745; evalue=1.57e-174; confidence=high
RiceOs09g0499600
-
identity=39.2; qcov=0.857; evalue=2.76e-95; confidence=medium
GOGO:0046983 (protein dimerization activity)
KEGG-
PfamPF04937 (DUF659); PF05699 (Dimer_Tnp_hAT)
InterPro-
eggNOG-
NRGeneID:131023422

打开注释模块

亚细胞定位 Top 5

Rank定位位置中文ScoreProtein ID
1 Nucleus 细胞核 1.00000 XP_057808946.1
2 Chromosome 染色体 0.00000 XP_057808946.1
3 Centromere 着丝粒 0.00000 XP_057808946.1
4 Chromatin 染色质 0.00000 XP_057808946.1
5 Telomere 端粒 0.00000 XP_057808946.1

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变;完整结果可进入 EMS 突变库继续筛选或下载。

位置 REF ALT 类型 影响 携带材料数 材料
Chr4:39659187 G A EMS_canonical_SNV CDS_variant 5 B29,B31,B36,C11,C8
Chr4:39659204 C T EMS_canonical_SNV CDS_variant 5 B29,B31,B36,C11,C8
Chr4:39659207 C T EMS_canonical_SNV CDS_variant 1 C80
Chr4:39659211 G A EMS_canonical_SNV CDS_variant 3 B105,B43,C71
Chr4:39659225 C T EMS_canonical_SNV CDS_variant 3 B34,B80,C74
Chr4:39659283 C T EMS_canonical_SNV CDS_variant 2 A19,C80
Chr4:39659293 C T EMS_canonical_SNV CDS_variant 1 C58
Chr4:39659299 G A EMS_canonical_SNV CDS_variant 1 B85
Chr4:39659306 C T EMS_canonical_SNV CDS_variant 5 A20,B52,B55,C60,D2
Chr4:39659308 C T EMS_canonical_SNV CDS_variant 1 B44
Chr4:39659315 C T EMS_canonical_SNV CDS_variant 4 B59,B71,C44,D10
Chr4:39659363 C T EMS_canonical_SNV CDS_variant 2 B100,B26

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan;位置为对应蛋白序列上的氨基酸坐标。

XP_057808946.1
491 aa
N
1
246
491
DUF659
Dimer_Tnp_hAT
C
PF04937 DUF659 1-69 aa PF05699 Dimer_Tnp_hAT 297-361 aa
Protein ID 来源 结构域编号 结构域名称 类型 起始 aa 终止 aa E-value Score 说明
XP_057808946.1 Pfam PF04937 DUF659 Domain 1 69 2.5e-27 96.1 Domain of unknown function (DUF659)
XP_057808946.1 Pfam PF05699 Dimer_Tnp_hAT Domain 297 361 2.2e-12 47.3 hAT family C-terminal dimerisation region

cDNA / CDS / Protein 序列

下载基因组 DNA(仅基因区域)

每个公开基因均提供参考注释对应的转录本序列;蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

1 records

下载 cDNA FASTA
XM_057952963.1
TCCTTGTCAATTCTCCAAAAGGGCCCGTGTTCATCAAATCGGTGGAAGTATCCGAAGTTGTGAAAGATGCAATCACTTTGTTTCAAATGCTTGATTCTATTGTTGAGGAAGTTGGAGAGGCAAATGTTGTGCAAGTGGTGACGGATAATGCATCTAACTATGTCAAAGCGGGGAAATTGCTTATGACAAAAAGACCACATCTTTATTGGACTCCATATGCCGCACATTGCGTGGACTTGATGTTGGAGGATATTGGAAAG...

CDS

1 records

下载 CDS FASTA
LOC131023422
ATGCTTGATTCTATTGTTGAGGAAGTTGGAGAGGCAAATGTTGTGCAAGTGGTGACGGATAATGCATCTAACTATGTCAAAGCGGGGAAATTGCTTATGACAAAAAGACCACATCTTTATTGGACTCCATATGCCGCACATTGCGTGGACTTGATGTTGGAGGATATTGGAAAGCTTCCAAAGATCAAGAATGCCCTCAAGAAGGCGATCTTCATGAATGGTTATATATATAACCACGTCACCGTTGTCAACATGATGAG...

Protein

1 records

下载 Protein FASTA
XP_057808946.1
MLDSIVEEVGEANVVQVVTDNASNYVKAGKLLMTKRPHLYWTPYAAHCVDLMLEDIGKLPKIKNALKKAIFMNGYIYNHVTVVNMMRRFTNQRNLHQPAVTMFATSFITLAQYHKQNNNLRKMVTSKEWNASKWAKEAGGKKVTAYILQDTFWRNVLYALKLGGPLVTVLRMVDGDKKPAMGYIYEAMVRAKEAIAKSFGYKEEHYKEAFGIIDKRWDCQLHRPLHAARYFLNPEIYYDNPDQVSCQEIEQGLYECIQRL...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补,使最终 FASTA 为转录方向 5′→3′。

下载 upstream 下载 downstream 下载 upstream + gene + downstream

JBrowse

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