当前解析结果
SmilChr04G002485| 统一新 Gene ID | SmilChr04G002485 |
|---|---|
| 名称 | SmilChr04G002485 |
| 描述 | replication factor C subunit 3-like |
| 染色体 / SeqID | Chr04 / NC_080390.1 |
| 坐标与链方向 | 39691113 - 39694754 / + |
| NCBI Gene ID | LOC131021614 |
|---|---|
| GeneID | 131021614 |
| locus_tag | - |
| NCBI Name | LOC131021614 |
| 原始查询 | SmilChr04G002485 |
| 来源 | GFF basic annotation; NCBI GO GAF; KEGG smil; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | replication factor C subunit 3-like |
| 产物 | replication factor C subunit 3-like |
| Arabidopsis | AT5G27740 (EMB2775)ATPase family associated with various cellular activities (AAA) [Source:NCBI gene (formerly Entrezgene);Acc:832836] identity=40.4; qcov=0.582; evalue=1.14e-83; confidence=medium |
| Rice | Os02g0704966- identity=48.4; qcov=0.71; evalue=5.14e-142; confidence=high |
| GO | GO:0003677 (DNA binding); GO:0003689 (DNA clamp loader activity); GO:0005634 (nucleus); GO:0005663 (DNA replication factor C complex); GO:0006261 (DNA-templated DNA replication); GO:0006281 (DNA repair) |
| KEGG | smil03030 (DNA replication - Salvia miltiorrhiza (redroot sage)); smil03410 (Base excision repair - Salvia miltiorrhiza (redroot sage)); smil03420 (Nucleotide excision repair - Salvia miltiorrhiza (redroot sage)); smil03430 (Mismatch repair - Salvia miltiorrhiza (redroot sage)) |
| Pfam | PF21960 (RCF1-5-like_lid); PF22534 (RFC_C) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:131021614 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Nucleus | 细胞核 | 0.80000 | XP_057806855.1 |
| 2 | Cytoplasm | 细胞质 | 0.40000 | XP_057806855.1 |
| 3 | Chromosome | 染色体 | 0.20000 | XP_057806855.1 |
| 4 | Centromere | 着丝粒 | 0.00000 | XP_057806855.1 |
| 5 | Chromatin | 染色质 | 0.00000 | XP_057806855.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr4:39691273 |
AG |
A |
1bp_deletion | frameshift_variant | 1 | C21 |
Chr4:39691273 |
AG |
A |
1bp_deletion | CDS_variant | 1 | C21 |
Chr4:39691464 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | C45 |
Chr4:39691536 |
C |
T |
EMS_canonical_SNV | CDS_variant | 4 | B1,B46,B76,C85 |
Chr4:39691725 |
C |
T |
EMS_canonical_SNV | CDS_variant | 4 | B122,B41,C11,C69 |
Chr4:39691732 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | C2,C44 |
Chr4:39691734 |
G |
A |
EMS_canonical_SNV | CDS_variant | 5 | B100,B130,B58,B59,B60 |
Chr4:39691824 |
C |
T |
EMS_canonical_SNV | CDS_variant | 3 | B114,B44,C37 |
Chr4:39693356 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | C6 |
Chr4:39693395 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | B14,B54 |
Chr4:39693546 |
G |
A |
EMS_canonical_SNV | stop_gained | 19 | B13,B130,B15,B20,B24,B34,B38,B39,B6,B76,B94,C1,C13,C19,C37,C56,C67,C83,D6 |
Chr4:39693947 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | A1 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。
XP_057806855.1PF21960
RCF1-5-like_lid 445-485 aa
PF22534
RFC_C 500-594 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057806855.1 |
Pfam | PF21960 |
RCF1-5-like_lid | Domain | 445 | 485 | 1.9e-11 | 44.4 | RCF1/5-like, AAA+ ATPase lid domain |
XP_057806855.1 |
Pfam | PF22534 |
RFC_C | Domain | 500 | 594 | 9.5e-14 | 52.5 | Replication factor C subunit 3, C-terminal domain |
每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。