当前解析结果
SmilChr04G002492| 统一新 Gene ID | SmilChr04G002492 |
|---|---|
| 名称 | SmilChr04G002492 |
| 描述 | uncharacterized SmilChr04G002492 |
| 染色体 / SeqID | Chr04 / NC_080390.1 |
| 坐标与链方向 | 39811475 - 39812900 / - |
| NCBI Gene ID | LOC131021622 |
|---|---|
| GeneID | 131021622 |
| locus_tag | - |
| NCBI Name | LOC131021622 |
| 原始查询 | SmilChr04G002492 |
| 来源 | GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | alpha/beta-Hydrolases superfamily protein [Source:NCBI gene (formerly Entrezgene);Acc:824264]; symbol=AT3G51000; hit=AT3G51000; species=arabidopsis; confidence=high |
| 产物 | alpha/beta-Hydrolases superfamily protein [Source:NCBI gene (formerly Entrezgene);Acc:824264]; symbol=AT3G51000; hit=AT3G51000; species=arabidopsis; confidence=high |
| Arabidopsis | AT3G51000 (AT3G51000)alpha/beta-Hydrolases superfamily protein [Source:NCBI gene (formerly Entrezgene);Acc:824264] identity=59.8; qcov=0.994; evalue=2.91e-140; confidence=high |
| Rice | Os12g0636400- identity=53.1; qcov=1.01; evalue=2.19e-116; confidence=high |
| GO | GO:0016787 (hydrolase activity) |
| KEGG | - |
| Pfam | PF00561 (Abhydrolase_1); PF12146 (Hydrolase_4); PF12697 (Abhydrolase_6) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:131021622 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Cytosol | 细胞质基质 | 1.00000 | XP_057806863.1 |
| 2 | Cytoplasm | 细胞质 | 0.60000 | XP_057806863.1 |
| 3 | Nucleus | 细胞核 | 0.00000 | XP_057806863.1 |
| 4 | Chromosome | 染色体 | 0.00000 | XP_057806863.1 |
| 5 | Centromere | 着丝粒 | 0.00000 | XP_057806863.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变;完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr4:39811545 |
G |
GT |
1bp_insertion | frameshift_variant | 3 | B1,B46,C85 |
Chr4:39811545 |
G |
GT |
1bp_insertion | CDS_variant | 3 | B1,B46,C85 |
Chr4:39811687 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | A18 |
Chr4:39811760 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | A5,B29 |
Chr4:39812265 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B69 |
Chr4:39812348 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | A1,A18 |
Chr4:39812549 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | B2,B34 |
Chr4:39812561 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B44 |
Chr4:39812630 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | C81 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan;位置为对应蛋白序列上的氨基酸坐标。
XP_057806863.1PF00561
Abhydrolase_1 32-307 aa
PF12146
Hydrolase_4 33-139 aa
PF12697
Abhydrolase_6 34-311 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057806863.1 |
Pfam | PF00561 |
Abhydrolase_1 | Domain | 32 | 307 | 6e-28 | 98.9 | alpha/beta hydrolase fold |
XP_057806863.1 |
Pfam | PF12146 |
Hydrolase_4 | Domain | 33 | 139 | 1.6e-10 | 41.4 | Serine aminopeptidase, S33 |
XP_057806863.1 |
Pfam | PF12697 |
Abhydrolase_6 | Domain | 34 | 311 | 1.1e-17 | 66.1 | Alpha/beta hydrolase family |
每个公开基因均提供参考注释对应的转录本序列;蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补,使最终 FASTA 为转录方向 5′→3′。