Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr04G002501`

染色体: Chr04 坐标: 39962913-39966362 链方向: + 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr04G002501`
名称	SmilChr04G002501
描述	glyceraldehyde-3-phosphate dehydrogenase, cytosolic
染色体 / SeqID	Chr04 / NC_080390.1
坐标与链方向	39962913 - 39966362 / `+`

ID 对照

NCBI Gene ID	`LOC131021632`
GeneID	`131021632`
locus_tag	`-`
NCBI Name	`LOC131021632`
原始查询	`SmilChr04G002501`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; KEGG smil; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	glyceraldehyde-3-phosphate dehydrogenase, cytosolic
产物	glyceraldehyde-3-phosphate dehydrogenase%2C cytosolic
Arabidopsis	`AT3G04120` (GAPC1) glyceraldehyde-3-phosphate dehydrogenase C subunit 1 [Source:NCBI gene (formerly Entrezgene);Acc:819567] identity=90.7; qcov=0.985; evalue=0; confidence=high
Rice	`Os04g0486600` (GAPDH) - identity=89.6; qcov=1; evalue=0; confidence=high
GO	GO:0006006 (glucose metabolic process); GO:0016620 (oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor); GO:0050661 (NADP binding); GO:0051287 (NAD binding)
KEGG	smil00010 (Glycolysis / Gluconeogenesis - Salvia miltiorrhiza (redroot sage)); smil00710 (Carbon fixation by Calvin cycle - Salvia miltiorrhiza (redroot sage)); smil01100 (Metabolic pathways - Salvia miltiorrhiza (redroot sage)); smil01110 (Biosynthesis of secondary metabolites - Salvia miltiorrhiza (redroot sage)); smil01200 (Carbon metabolism - Salvia miltiorrhiza (redroot sage)); smil01230 (Biosynthesis of amino acids - Salvia miltiorrhiza (redroot sage))
Pfam	PF00044 (Gp_dh_N); PF02800 (Gp_dh_C)
InterPro	-
eggNOG	-
NR	GeneID:131021632

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Cytoplasm	细胞质	1.00000	`XP_057806868.1`
2	Cytosol	细胞质基质	1.00000	`XP_057806868.1`
3	Nucleus	细胞核	0.00000	`XP_057806868.1`
4	Chromosome	染色体	0.00000	`XP_057806868.1`
5	Centromere	着丝粒	0.00000	`XP_057806868.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr4:39963469`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	B117,C14
`Chr4:39964467`	`CT`	`C`	1bp_deletion	frameshift_variant	1	B102
`Chr4:39964467`	`CT`	`C`	1bp_deletion	CDS_variant	1	B102
`Chr4:39964591`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	B31,C84
`Chr4:39964995`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B74
`Chr4:39965161`	`C`	`CT`	1bp_insertion	frameshift_variant	18	B122,B124,B32,B51,B52,B53,B56,B57,B58,B63,B76,B87,B96,C44,C57,C64,C66,C80
`Chr4:39965435`	`C`	`CT`	1bp_insertion	frameshift_variant	81	A10,A15,A16,A19,A20,A25,A6,A8,B102,B104,B110,B117,B120,B129,B13,B131,B137,B15,B16,B17,B19,B20,B25,B26,B27,B28,B29,B3,B30,B31,B35,B46,B5,B50,B6,B60,B65,B69,B7,B73,B74,B77,B78,B79,B80,B83,B89,B91,B93,B95,C14,C15,C17,C18,C21,C27,C34,C36,C37,C41,C42,C45,C5,C50,C58,C59,C6,C60,C63,C69,C7,C70,C71,C73,C77,C81,C82,C84,D1,D5,D9
`Chr4:39965508`	`AC`	`A`	1bp_deletion	frameshift_variant	3	B102,B20,D5
`Chr4:39965508`	`AC`	`A`	1bp_deletion	CDS_variant	3	B102,B20,D5
`Chr4:39965510`	`AG`	`A`	1bp_deletion	frameshift_variant	3	B102,B20,D5
`Chr4:39965510`	`AG`	`A`	1bp_deletion	CDS_variant	3	B102,B20,D5
`Chr4:39965513`	`G`	`A`	EMS_canonical_SNV	CDS_variant	3	B102,B20,D5

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057806868.1

337 aa

168

337

Gp_dh_N

Gp_dh_C

PF00044 Gp_dh_N 4-106 aa PF02800 Gp_dh_C 153-318 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057806868.1`	Pfam	`PF00044`	Gp_dh_N	Domain	4	106	4.6e-34	117.4	Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain
`XP_057806868.1`	Pfam	`PF02800`	Gp_dh_C	Domain	153	318	2.3e-76	255.9	Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

1 records

下载 cDNA FASTA

XM_057950885.1
GATCAACACCACGCACACAGGTAGACGGCTCAGATATACCGTAGGCACAAACTGATCCATGATGGCCCATACACCGGTTGCATCGTATAATTCCGTTTCTTCCCTGCTTATCTAAAATACTAAAACCCCACCGCACCTATTCTCCTCACTTTCCACTCACAGCTCTCTCGACTCTTGCTCTTCAACTCCACTTTTGCTCTCTCTCTCTCACTCCTACAAACAAGAAATGGCTAAGATTAAGATCGGGATCAATGGTTTTG...

CDS

1 records

下载 CDS FASTA

LOC131021632
ATGGCTAAGATTAAGATCGGGATCAATGGTTTTGGTAGAATTGGCCGTCTGGTTGCCAGGGTTGCTCTTCAAAGAGATGATGTTGAGCTTGTTGCTGTCAACGATCCGTTCATCACCGTTGACTACATGACCTATATGTTCAAGTATGACAGTGTGCACGGTCAATGGAAGCACCATGAGCTCAAGGTTAAGGATGAGAAAACCCTTCTCTTTGGTGAAAAGCCTGTGACTGTTTTTGGCTTTAGAAATCCTGAAGAGAT...

Protein

1 records

下载 Protein FASTA

XP_057806868.1
MAKIKIGINGFGRIGRLVARVALQRDDVELVAVNDPFITVDYMTYMFKYDSVHGQWKHHELKVKDEKTLLFGEKPVTVFGFRNPEEIPWASTGAEYIVESTGVFTDQDKAAAHLKGGAKKVIISAPSKDAPMFVVGVNEKSYTPDLNIVSNASCTTNCLAPLAKVINDRFGIVEGLMTTVHSITATQKTVDGPSAKDWRGGRAASFNIIPSSTGAAKAVGKVLPALNGKLTGMAFRVPTVDVSVVDLTVRLEKEATYEEI...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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JBrowse

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