当前解析结果
SmilChr04G002537| 统一新 Gene ID | SmilChr04G002537 |
|---|---|
| 名称 | SmilChr04G002537 |
| 描述 | uncharacterized SmilChr04G002537 |
| 染色体 / SeqID | Chr04 / NC_080390.1 |
| 坐标与链方向 | 40603210 - 40606038 / + |
| NCBI Gene ID | LOC131023434 |
|---|---|
| GeneID | 131023434 |
| locus_tag | - |
| NCBI Name | LOC131023434 |
| 原始查询 | SmilChr04G002537 |
| 来源 | GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | hit=Os08g0125300; species=rice; confidence=low |
| 产物 | hit=Os08g0125300; species=rice; confidence=low |
| Arabidopsis | AT1G21280 (AT1G21280)Copia-like polyprotein/retrotransposon [Source:NCBI gene (formerly Entrezgene);Acc:838724] identity=25.3; qcov=0.202; evalue=1.69e-14; confidence=weak |
| Rice | Os08g0125300- identity=29.5; qcov=0.456; evalue=9.29e-54; confidence=low |
| GO | GO:0003676 (nucleic acid binding); GO:0015074 (DNA integration) |
| KEGG | - |
| Pfam | PF00665 (rve); PF13976 (gag_pre-integrs); PF22936 (Pol_BBD); PF25597 (SH3_retrovirus) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:131023434 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Cytoplasm | 细胞质 | 0.80000 | XP_057808957.1 |
| 2 | Nucleus | 细胞核 | 0.20000 | XP_057808957.1 |
| 3 | Cytosol | 细胞质基质 | 0.20000 | XP_057808957.1 |
| 4 | Chromosome | 染色体 | 0.00000 | XP_057808957.1 |
| 5 | Centromere | 着丝粒 | 0.00000 | XP_057808957.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr4:40603447 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | B35,B64 |
Chr4:40603496 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B140 |
Chr4:40603716 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B82 |
Chr4:40603764 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B140 |
Chr4:40603832 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | C8 |
Chr4:40603853 |
C |
T |
EMS_canonical_SNV | CDS_variant | 5 | B42,B43,C28,C74,C85 |
Chr4:40603854 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | D9 |
Chr4:40603911 |
C |
T |
EMS_canonical_SNV | CDS_variant | 5 | A25,B37,B45,B85,B88 |
Chr4:40603921 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | D10 |
Chr4:40603952 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | D4,D6 |
Chr4:40603955 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | B126,C2 |
Chr4:40603991 |
A |
AG |
1bp_insertion | frameshift_variant | 2 | C29,C35 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。
XP_057808957.1PF22936
Pol_BBD 515-588 aa
PF13976
gag_pre-integrs 620-682 aa
PF00665
rve 700-796 aa
PF25597
SH3_retrovirus 874-934 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057808957.1 |
Pfam | PF22936 |
Pol_BBD | Domain | 515 | 588 | 1.3e-12 | 48.6 | Pol polyprotein, beta-barrel domain |
XP_057808957.1 |
Pfam | PF13976 |
gag_pre-integrs | Domain | 620 | 682 | 2.3e-14 | 53.6 | GAG-pre-integrase domain |
XP_057808957.1 |
Pfam | PF00665 |
rve | Domain | 700 | 796 | 2.8e-15 | 57.1 | Integrase core domain |
XP_057808957.1 |
Pfam | PF25597 |
SH3_retrovirus | Domain | 874 | 934 | 5.9e-22 | 78.0 | Retroviral polymerase SH3-like domain |
每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。