Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr04G002545`

染色体: Chr04 坐标: 40749301-40755428 链方向: - 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr04G002545`
名称	SmilChr04G002545
描述	uncharacterized SmilChr04G002545
染色体 / SeqID	Chr04 / NC_080390.1
坐标与链方向	40749301 - 40755428 / `-`

ID 对照

NCBI Gene ID	`LOC131021664`
GeneID	`131021664`
locus_tag	`-`
NCBI Name	`LOC131021664`
原始查询	`SmilChr04G002545`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	transmembrane/coiled-coil protein (DUF726) [Source:NCBI gene (formerly Entrezgene);Acc:829778]; symbol=AT4G36210; hit=AT4G36210; species=arabidopsis; confidence=high
产物	transmembrane/coiled-coil protein (DUF726) [Source:NCBI gene (formerly Entrezgene);Acc:829778]; symbol=AT4G36210; hit=AT4G36210; species=arabidopsis; confidence=high
Arabidopsis	`AT4G36210` (AT4G36210) transmembrane/coiled-coil protein (DUF726) [Source:NCBI gene (formerly Entrezgene);Acc:829778] identity=63.8; qcov=1.01; evalue=0; confidence=high
Rice	`Os03g0112800` (STS1) - identity=61; qcov=1.01; evalue=0; confidence=high
GO	-
KEGG	-
Pfam	PF05277 (DUF726)
InterPro	-
eggNOG	-
NR	GeneID:131021664

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Cytoplasm	细胞质	0.60000	`XP_057806898.1`
2	Mitochondrion	线粒体	0.40000	`XP_057806896.1`
3	Endoplasmic reticulum	内质网	0.20000	`XP_057806898.1`
4	Mitochondrion outer membrane	线粒体外膜	0.20000	`XP_057806899.1`
5	Lipid droplet	脂滴	0.20000	`XP_057806898.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr4:40749696`	`A`	`AT`	1bp_insertion	frameshift_variant	13	A10,A2,B121,B124,B129,B16,B81,B89,C26,C28,C43,C58,C9
`Chr4:40751351`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B58
`Chr4:40751503`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B110
`Chr4:40751519`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	B104,D11
`Chr4:40751525`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	C77
`Chr4:40752186`	`C`	`T`	EMS_canonical_SNV	CDS_variant	3	A1,A24,C42
`Chr4:40752199`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	A24,C42
`Chr4:40753384`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	C57
`Chr4:40753404`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B15
`Chr4:40753525`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B38
`Chr4:40753733`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	B59,C81
`Chr4:40754705`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	D2

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057806896.1

703 aa

352

703

DUF726

PF05277 DUF726 308-635 aa

XP_057806898.1

667 aa

334

667

DUF726

PF05277 DUF726 308-656 aa

XP_057806899.1

632 aa

316

632

DUF726

PF05277 DUF726 308-630 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057806896.1`	Pfam	`PF05277`	DUF726	Family	308	635	1.4e-93	314.3	Protein of unknown function (DUF726)
`XP_057806898.1`	Pfam	`PF05277`	DUF726	Family	308	656	6.6e-102	341.7	Protein of unknown function (DUF726)
`XP_057806899.1`	Pfam	`PF05277`	DUF726	Family	308	630	2e-92	310.5	Protein of unknown function (DUF726)

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

3 records

下载 cDNA FASTA

XM_057950913.1
CCGTTGTATAGTTTTAGTTCTTTATTCAATTTCAAAAAATAAATATAGTAGTATAATATTGTGTCCTAAAAAGAAATCAATATGACATACGGCGTCGTACTGATATTCGGGAAACCGTCAAAACTAATTGGAAACAAAGGAATACCGGAAAACGAACACACCGACTGCTCATCATCATTTCATCTGATCAAATTCTTCTTTCACTCGAAAATTCTCTCCAATTGCTTTTTTTTTTTTTCCAATTTTTTTCATGTCATTCT...

XM_057950915.1
ATTGTGTCCTAAAAAGAAATCAATATGACATACGGCGTCGTACTGATATTCGGGAAACCGTCAAAACTAATTGGAAACAAAGGAATACCGGAAAACGAACACACCGACTGCTCATCATCATTTCATCTGATCAAATTCTTCTTTCACTCGAAAATTCTCTCCAATTGCTTTTTTTTTTTTTCCAATTTTTTTCATGTCATTCTGCACGTTTAATTCCACTTAGCGCCAATTCGAACTGCAAAAGAAGGCAAAGGAAATGT...

CDS

3 records

下载 CDS FASTA

LOC131021664
ATGTCATCATCAAAGTCGATGCTGACGCCGCCGCAGAAATACGCGGCGGCAGCACTCTTTGCGATGGCTCTGAACCAGGCCCAAATCCACCAAACTCAGCCACTGGGATTTCCCGCTGCCGCCGAAGACGGCGCCCCGTCGGAGGAACGCGTCAGTAGCGGGAGCAGCTCCGATTCTGTTTCCGAGGACCCTCAGCTGTGGGCCCACCAATCCTCCGGACTCCTTCGACCTGTCTTCAAGTTTTTTGAAATTGATAGCAG...

Protein

3 records

下载 Protein FASTA

XP_057806896.1
MSSSKSMLTPPQKYAAAALFAMALNQAQIHQTQPLGFPAAAEDGAPSEERVSSGSSSDSVSEDPQLWAHQSSGLLRPVFKFFEIDSRAWGGLEETAGSSPAKNHLAAFLRLLAEGSSDVSSEAVDNGTALVNAIDAMSSKLELSPADHDSKKERQLKYEYACREKFSTPEATQESKPEERNSSDISQQEKDVATSKSEQAVRQNIIESDGRPIEEAAMVTYLTKVTVLNELLSACLADLPEDNGKSTKRRKGYDSRHRVA...

XP_057806898.1
MSSSKSMLTPPQKYAAAALFAMALNQAQIHQTQPLGFPAAAEDGAPSEERVSSGSSSDSVSEDPQLWAHQSSGLLRPVFKFFEIDSRAWGGLEETAGSSPAKNHLAAFLRLLAEGSSDVSSEAVDNGTALVNAIDAMSSKLELSPADHDSKKERQLKYEYACREKFSTPEATQESKPEERNSSDISQQEKDVATSKSEQAVRQNIIESDGRPIEEAAMVTYLTKVTVLNELLSACLADLPEDNGKSTKRRKGYDSRHRVA...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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