当前解析结果
SmilChr04G002549| 统一新 Gene ID | SmilChr04G002549 |
|---|---|
| 名称 | SmilChr04G002549 |
| 描述 | kinesin-like protein KIN-7J |
| 染色体 / SeqID | Chr04 / NC_080390.1 |
| 坐标与链方向 | 40769866 - 40774424 / + |
| NCBI Gene ID | LOC131021667 |
|---|---|
| GeneID | 131021667 |
| locus_tag | - |
| NCBI Name | LOC131021667 |
| 原始查询 | SmilChr04G002549 |
| 来源 | GFF basic annotation; NCBI GO GAF; KEGG smil; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | kinesin-like protein KIN-7J |
| 产物 | kinesin-like protein KIN-7J |
| Arabidopsis | AT3G51150 (AT3G51150)ATP binding microtubule motor family protein [Source:NCBI gene (formerly Entrezgene);Acc:824279] identity=50.6; qcov=0.59; evalue=2.68e-167; confidence=medium |
| Rice | Os08g0547500- identity=42.4; qcov=1.04; evalue=0; confidence=medium |
| GO | GO:0003777 (microtubule motor activity); GO:0005524 (ATP binding); GO:0007018 (microtubule-based movement); GO:0008017 (microtubule binding) |
| KEGG | smil04814 (Motor proteins - Salvia miltiorrhiza (redroot sage)) |
| Pfam | PF00225 (Kinesin); PF11995 (DUF3490); PF16796 (Microtub_bd) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:131021667 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Cytoskeleton | 细胞骨架 | 1.00000 | XP_057806903.1 |
| 2 | Phragmoplast | Phragmoplast | 0.40000 | XP_057806903.1 |
| 3 | Nucleus | 细胞核 | 0.20000 | XP_057806903.1 |
| 4 | Spindle | Spindle | 0.20000 | XP_057806903.1 |
| 5 | Chromosome | 染色体 | 0.00000 | XP_057806903.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr4:40770369 |
G |
A |
EMS_canonical_SNV | CDS_variant | 3 | B120,B62,D11 |
Chr4:40770408 |
C |
T |
EMS_canonical_SNV | CDS_variant | 4 | A21,B56,B96,C35 |
Chr4:40770409 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | B59,C81 |
Chr4:40770959 |
G |
A |
EMS_canonical_SNV | CDS_variant | 3 | B91,C21,C29 |
Chr4:40770983 |
C |
T |
EMS_canonical_SNV | CDS_variant | 3 | B104,C29,D11 |
Chr4:40771027 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | B104,D11 |
Chr4:40771037 |
C |
T |
EMS_canonical_SNV | CDS_variant | 4 | B104,B122,C11,C69 |
Chr4:40771042 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | D2 |
Chr4:40771059 |
G |
A |
EMS_canonical_SNV | CDS_variant | 3 | B120,B62,D11 |
Chr4:40771269 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | B120,B62 |
Chr4:40771431 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | B59,C81 |
Chr4:40771438 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B131 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。
XP_057806903.1PF00225
Kinesin 20-336 aa
PF16796
Microtub_bd 51-151 aa
PF11995
DUF3490 773-933 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057806903.1 |
Pfam | PF00225 |
Kinesin | Domain | 20 | 336 | 1e-84 | 285.1 | Kinesin motor domain |
XP_057806903.1 |
Pfam | PF16796 |
Microtub_bd | Domain | 51 | 151 | 3.2e-17 | 63.6 | Microtubule binding |
XP_057806903.1 |
Pfam | PF11995 |
DUF3490 | Family | 773 | 933 | 8.3e-66 | 221.4 | Domain of unknown function (DUF3490) |
每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。