Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr04G002551`

染色体: Chr04 坐标: 40798196-40806013 链方向: - 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr04G002551`
名称	SmilChr04G002551
描述	WAT1-related protein At5g64700-like
染色体 / SeqID	Chr04 / NC_080390.1
坐标与链方向	40798196 - 40806013 / `-`

ID 对照

NCBI Gene ID	`LOC131021668`
GeneID	`131021668`
locus_tag	`-`
NCBI Name	`LOC131021668`
原始查询	`SmilChr04G002551`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	WAT1-related protein At5g64700-like
产物	WAT1-related protein At5g64700-like
Arabidopsis	`AT5G64700` (UMAMIT21) nodulin MtN21 /EamA-like transporter family protein [Source:NCBI gene (formerly Entrezgene);Acc:836591] identity=52.5; qcov=1.03; evalue=4.42e-117; confidence=high
Rice	`Os05g0106200` (OsUMAMIT8) - identity=48.7; qcov=1.02; evalue=2.92e-104; confidence=high
GO	GO:0005886 (plasma membrane); GO:0022857 (transmembrane transporter activity)
KEGG	-
Pfam	PF00892 (EamA)
InterPro	-
eggNOG	-
NR	GeneID:131021668

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Cell membrane	细胞膜	0.80000	`XP_057806904.1`
2	Vacuole	液泡	0.20000	`XP_057806904.1`
3	Vacuole membrane	液泡膜	0.20000	`XP_057806904.1`
4	Nucleus	细胞核	0.00000	`XP_057806904.1`
5	Chromosome	染色体	0.00000	`XP_057806904.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr4:40799139`	`C`	`CTT`	2bp_insertion	frameshift_variant	2	B59,C81
`Chr4:40799139`	`C`	`CTT`	2bp_insertion	CDS_variant	2	B59,C81
`Chr4:40800106`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B44
`Chr4:40800118`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B88
`Chr4:40800126`	`G`	`A`	EMS_canonical_SNV	CDS_variant	3	B40,B98,C80
`Chr4:40800146`	`G`	`A`	EMS_canonical_SNV	CDS_variant	5	A23,A8,B107,C63,C87
`Chr4:40800158`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	D11
`Chr4:40800170`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B59
`Chr4:40800325`	`G`	`A`	EMS_canonical_SNV	CDS_variant	3	A23,B69,C77
`Chr4:40800394`	`G`	`A`	EMS_canonical_SNV	CDS_variant	3	B68,B80,C82
`Chr4:40800583`	`C`	`T`	EMS_canonical_SNV	CDS_variant	3	C14,C18,C24
`Chr4:40805763`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	C77

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057806904.1

358 aa

179

358

EamA

PF00892 EamA 6-117 aa PF00892 EamA 187-325 aa

XP_057806906.1

349 aa

174

349

EamA

PF00892 EamA 6-146 aa PF00892 EamA 178-316 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057806904.1`	Pfam	`PF00892`	EamA	Domain	6	117	1.7e-23	84.1	EamA-like transporter family
`XP_057806904.1`	Pfam	`PF00892`	EamA	Domain	187	325	1.7e-23	84.1	EamA-like transporter family
`XP_057806906.1`	Pfam	`PF00892`	EamA	Domain	6	146	1.1e-25	91.2	EamA-like transporter family
`XP_057806906.1`	Pfam	`PF00892`	EamA	Domain	178	316	1.1e-25	91.2	EamA-like transporter family

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

2 records

下载 cDNA FASTA

XM_057950921.1
TCTCTCTCTCTCTCTTGTGAACTTGTATTTATACCCCAAATTTTTCGAGGCAGAAACATAAATTTGAAGCTTAATTATAGTATATTCTTAGGTGCAAAAATGGTTGAAAGCAAGGTGATTTTGTGTGTAGTTTCCATACAAACCATTTATGCAGGCAATTTCTTGCTTACGAAGCTAGCTTTCGATGTGGGAATGAACACATTTGTGTTTGTTTTCTACAGACAAGCTGCTGCTACTCTTTTCTTGGCCCCCATTGCCAT...

XM_057950923.1
TCTCTCTCTCTCTTGTGAACTTGTATTTATACCCCAAATTTTTCGAGGCAGAAACATAAATTTGAAGCTTAATTATAGTATATTCTTAGGTGCAAAAATGGTTGAAAGCAAGGTGATTTTGTGTGTAGTTTCCATACAAACCATTTATGCAGGCAATTTCTTGCTTACGAAGCTAGCTTTCGATGTGGGAATGAACACATTTGTGTTTGTTTTCTACAGACAAGCTGCTGCTACTCTTTTCTTGGCCCCCATTGCCATCT...

CDS

2 records

下载 CDS FASTA

LOC131021668
ATGGTTGAAAGCAAGGTGATTTTGTGTGTAGTTTCCATACAAACCATTTATGCAGGCAATTTCTTGCTTACGAAGCTAGCTTTCGATGTGGGAATGAACACATTTGTGTTTGTTTTCTACAGACAAGCTGCTGCTACTCTTTTCTTGGCCCCCATTGCCATCTTCTTTGAGAGGAAGACAGCTCCTCGGCTTTCATTCTCTACATTCATCAAGATTTTCTTCCTTTCTTTGTTTGGAATTACGATGAGCTTAGATGTTGT...

Protein

2 records

下载 Protein FASTA

XP_057806904.1
MVESKVILCVVSIQTIYAGNFLLTKLAFDVGMNTFVFVFYRQAAATLFLAPIAIFFERKTAPRLSFSTFIKIFFLSLFGITMSLDVVGVGLKSTTASLGAAISNSLPVITFFLAVLLSVNMCACKCRMEKVKIRTSPGMMKMIGVSLCMGGVAAIAFYRGPFIKLWHLHHIHTTFHSQITPTNTWIKGVFLLLLSNTTWASWLLFQGRVLNIYPSKLLLTTLQCFLSTIQSFVAAVAFARDPAHWKIGWNIRLLSVAYCG...

XP_057806906.1
MVESKVILCVVSIQTIYAGNFLLTKLAFDVGMNTFVFVFYRQAAATLFLAPIAIFFERKTAPRLSFSTFIKIFFLSLFGITMSLDVVGVGLKSTTASLGAAISNSLPVITFFLAVLLRMEKVKIRTSPGMMKMIGVSLCMGGVAAIAFYRGPFIKLWHLHHIHTTFHSQITPTNTWIKGVFLLLLSNTTWASWLLFQGRVLNIYPSKLLLTTLQCFLSTIQSFVAAVAFARDPAHWKIGWNIRLLSVAYCGIIVTGVTFY...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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