Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr04G002564`

染色体: Chr04 坐标: 40961969-40965465 链方向: - 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr04G002564`
名称	SmilChr04G002564
描述	pentatricopeptide repeat-containing protein At4g19191, mitochondrial-like
染色体 / SeqID	Chr04 / NC_080390.1
坐标与链方向	40961969 - 40965465 / `-`

ID 对照

NCBI Gene ID	`LOC131021678`
GeneID	`131021678`
locus_tag	`-`
NCBI Name	`LOC131021678`
原始查询	`SmilChr04G002564`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	pentatricopeptide repeat-containing protein At4g19191, mitochondrial-like
产物	pentatricopeptide repeat-containing protein At4g19191%2C mitochondrial-like
Arabidopsis	`AT4G19191` (AT4G19191) Tetratricopeptide repeat (TPR)-like superfamily protein [Source:NCBI gene (formerly Entrezgene);Acc:6240220] identity=49; qcov=0.975; evalue=0; confidence=high
Rice	`Os03g0781100` - identity=34.5; qcov=0.969; evalue=1.38e-122; confidence=low
GO	GO:0003723 (RNA binding); GO:0005515 (protein binding); GO:0009451 (RNA modification)
KEGG	-
Pfam	PF01535 (PPR); PF13041 (PPR_2); PF13812 (PPR_3); PF20431 (E_motif)
InterPro	-
eggNOG	-
NR	GeneID:131021678

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Mitochondrion	线粒体	1.00000	`XP_057806919.1`
2	Nucleus	细胞核	0.00000	`XP_057806919.1`
3	Chromosome	染色体	0.00000	`XP_057806919.1`
4	Centromere	着丝粒	0.00000	`XP_057806919.1`
5	Chromatin	染色质	0.00000	`XP_057806919.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr4:40962669`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B104
`Chr4:40962724`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	D11
`Chr4:40962734`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	D11
`Chr4:40962867`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B41
`Chr4:40962927`	`C`	`T`	EMS_canonical_SNV	CDS_variant	4	B104,B113,C11,C69
`Chr4:40963182`	`C`	`T`	EMS_canonical_SNV	CDS_variant	3	B122,C11,C69
`Chr4:40963266`	`G`	`A`	EMS_canonical_SNV	CDS_variant	5	A23,B107,B138,C28,C58
`Chr4:40963278`	`TGC`	`T`	2bp_deletion	frameshift_variant	1	B14
`Chr4:40963278`	`TGC`	`T`	2bp_deletion	CDS_variant	1	B14
`Chr4:40963397`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B44
`Chr4:40963407`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	D11
`Chr4:40963448`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	C15,C51

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057806919.1

640 aa

320

640

PPR

PPR_2

PPR

PPR_3

PPR_2

PPR

E_motif

PF01535 PPR 9-35 aa PF01535 PPR 112-138 aa PF01535 PPR 214-244 aa PF01535 PPR 287-313 aa PF13041 PPR_2 315-361 aa PF01535 PPR 316-345 aa PF01535 PPR 388-413 aa PF13812 PPR_3 414-461 aa PF13041 PPR_2 415-461 aa PF01535 PPR 417-447 aa PF01535 PPR 452-478 aa PF01535 PPR 491-513 aa PF20431 E_motif 532-593 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057806919.1`	Pfam	`PF01535`	PPR	Repeat	9	35	1.3e-51	170.0	PPR repeat
`XP_057806919.1`	Pfam	`PF01535`	PPR	Repeat	112	138	1.3e-51	170.0	PPR repeat
`XP_057806919.1`	Pfam	`PF01535`	PPR	Repeat	214	244	1.3e-51	170.0	PPR repeat
`XP_057806919.1`	Pfam	`PF01535`	PPR	Repeat	287	313	1.3e-51	170.0	PPR repeat
`XP_057806919.1`	Pfam	`PF13041`	PPR_2	Repeat	315	361	2.5e-60	201.1	PPR repeat family
`XP_057806919.1`	Pfam	`PF01535`	PPR	Repeat	316	345	1.3e-51	170.0	PPR repeat
`XP_057806919.1`	Pfam	`PF01535`	PPR	Repeat	388	413	1.3e-51	170.0	PPR repeat
`XP_057806919.1`	Pfam	`PF13812`	PPR_3	Repeat	414	461	6e-26	91.0	Pentatricopeptide repeat domain
`XP_057806919.1`	Pfam	`PF13041`	PPR_2	Repeat	415	461	2.5e-60	201.1	PPR repeat family
`XP_057806919.1`	Pfam	`PF01535`	PPR	Repeat	417	447	1.3e-51	170.0	PPR repeat
`XP_057806919.1`	Pfam	`PF01535`	PPR	Repeat	452	478	1.3e-51	170.0	PPR repeat
`XP_057806919.1`	Pfam	`PF01535`	PPR	Repeat	491	513	1.3e-51	170.0	PPR repeat
`XP_057806919.1`	Pfam	`PF20431`	E_motif	Repeat	532	593	5.4e-15	56.1	E motif

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

1 records

下载 cDNA FASTA

XM_057950936.1
GATTTCATTTGTTAGCGGTTAAAACTAGTTGTAAATTTTTGAACTATGAAAATTTCCAGTTTGCGTGTGGGTAGATTGATTTGCGTCAATCCATACAACAAACTTTTTCATTTAAATCACATCAAGCATCTCATCTCCTCTGACTGCTATTACACACCTCAAATACTTTGAAATTCATCAAGAAAACTGGAAGCTTGCGGATGAGCTGCGTTGCGGTTGAGACATGATCATTCTGTTATCAACCGATTCAAAAACCAATG...

CDS

1 records

下载 CDS FASTA

LOC131021678
ATGCTCAACCGATTTTCAGTTGCCTCATGGAATTCCTGCATAAGGCAATCAGTTTACAGTGGCGATTTTCGGAAGGCGATTCTTCTCTTCACCCAAATGAAAAATCAATCTCATTTATATCCCGACAATCTAACCTTTCCTTTCGTTGCAAAAGCATGCGCAAAACTATCAGACCTCAAACTGTCAAGGATGATCCATGCCCACATTGTTAAAACGCCCTACTGTTGGGATGTATATGTGCATACTGCACTAGTTGACAT...

Protein

1 records

下载 Protein FASTA

XP_057806919.1
MLNRFSVASWNSCIRQSVYSGDFRKAILLFTQMKNQSHLYPDNLTFPFVAKACAKLSDLKLSRMIHAHIVKTPYCWDVYVHTALVDMYVKCGRLGCAQQMAGSVKCPCVVASWNALVVGFARAGVFDRVSLLFNRMRAARVVPDAVTLMGLTHLLSGMKDSMLLGGVHCFGMKCGLEKDVLVANTLIAGYAKCRDLCSAEKVFLGIALDCLSVVSWNAMIAGFAYFEEWLKAIKVYIRMLRDGFRPDASTILNLLSSMAQ...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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