Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr04G002565`

染色体: Chr04 坐标: 40966533-40972868 链方向: - 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr04G002565`
名称	SmilChr04G002565
描述	uncharacterized SmilChr04G002565
染色体 / SeqID	Chr04 / NC_080390.1
坐标与链方向	40966533 - 40972868 / `-`

ID 对照

NCBI Gene ID	`LOC131021677`
GeneID	`131021677`
locus_tag	`-`
NCBI Name	`LOC131021677`
原始查询	`SmilChr04G002565`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	Splicing factor, CC1-like protein [Source:NCBI gene (formerly Entrezgene);Acc:830848]; symbol=AT5G09880; hit=AT5G09880; species=arabidopsis; confidence=high
产物	Splicing factor, CC1-like protein [Source:NCBI gene (formerly Entrezgene);Acc:830848]; symbol=AT5G09880; hit=AT5G09880; species=arabidopsis; confidence=high
Arabidopsis	`AT5G09880` (AT5G09880) Splicing factor, CC1-like protein [Source:NCBI gene (formerly Entrezgene);Acc:830848] identity=76.9; qcov=0.987; evalue=0; confidence=high
Rice	`Os10g0439600` - identity=64; qcov=0.868; evalue=5.9e-141; confidence=high
GO	GO:0003723 (RNA binding); GO:0005634 (nucleus); GO:0006397 (mRNA processing)
KEGG	-
Pfam	PF00076 (RRM_1); PF15519 (RBM39linker)
InterPro	-
eggNOG	-
NR	GeneID:131021677

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Nucleus	细胞核	1.00000	`XP_057806917.1`
2	Nuclear speckle	核斑点	1.00000	`XP_057806917.1`
3	Cytoplasm	细胞质	1.00000	`XP_057806918.1`
4	Nucleoplasm	核质	1.00000	`XP_057806917.1`
5	Cytosol	细胞质基质	0.60000	`XP_057806918.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr4:40966713`	`C`	`T`	EMS_canonical_SNV	CDS_variant	5	B140,B28,B48,B58,B60
`Chr4:40966721`	`A`	`AC`	1bp_insertion	frameshift_variant	1	B44
`Chr4:40966721`	`A`	`AC`	1bp_insertion	CDS_variant	1	B44
`Chr4:40967583`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B104
`Chr4:40967694`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	D11
`Chr4:40970411`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B1
`Chr4:40972594`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	A8,B119
`Chr4:40972616`	`TC`	`T`	1bp_deletion	frameshift_variant	1	D5
`Chr4:40972616`	`TC`	`T`	1bp_deletion	CDS_variant	1	D5
`Chr4:40972618`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	D5

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057806917.1

593 aa

296

593

RRM_1

RBM39linker

RRM_1

PF00076 RRM_1 231-293 aa PF00076 RRM_1 327-397 aa PF15519 RBM39linker 417-517 aa PF00076 RRM_1 523-575 aa

XP_057806918.1

394 aa

197

394

RRM_1

RBM39linker

RRM_1

PF00076 RRM_1 32-94 aa PF00076 RRM_1 128-198 aa PF15519 RBM39linker 218-318 aa PF00076 RRM_1 324-376 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057806917.1`	Pfam	`PF00076`	RRM_1	Domain	231	293	7.9e-43	144.9	RNA recognition motif
`XP_057806917.1`	Pfam	`PF00076`	RRM_1	Domain	327	397	7.9e-43	144.9	RNA recognition motif
`XP_057806917.1`	Pfam	`PF15519`	RBM39linker	Domain	417	517	1.7e-21	77.5	linker between RRM2 and RRM3 domains in RBM39 protein
`XP_057806917.1`	Pfam	`PF00076`	RRM_1	Domain	523	575	7.9e-43	144.9	RNA recognition motif
`XP_057806918.1`	Pfam	`PF00076`	RRM_1	Domain	32	94	1.8e-42	143.7	RNA recognition motif
`XP_057806918.1`	Pfam	`PF00076`	RRM_1	Domain	128	198	1.8e-42	143.7	RNA recognition motif
`XP_057806918.1`	Pfam	`PF15519`	RBM39linker	Domain	218	318	9.4e-22	78.3	linker between RRM2 and RRM3 domains in RBM39 protein
`XP_057806918.1`	Pfam	`PF00076`	RRM_1	Domain	324	376	1.8e-42	143.7	RNA recognition motif

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

2 records

下载 cDNA FASTA

XM_057950934.1
AATTGTTGATACTTGAAGGCTCATATGCACACATTTAATTAGGAAAGGCAAGCCCAAATCCTTATCTACCGAGAATCGCATTTTACGATATCGTCCTTCACCTATCTTCTCAAAAACCCTAATTTAGTCCCGACGAGCTAGGGTTTCGACAACGTAATCAAATAATTTCAAGGGTGGTGGCTGAGTTATCATCTCCGGCAACTCGGATTAGGATGGATTTCGACGAGTACGACTACCTGGAGAAAGCGGTCGAAGAAACT...

XM_057950935.1
GGAACGTGAAAGAGAGAGGGAACTGTTGAGGGATAAGGAGCGTGAGGAGAGCAGATGGAATATTTGCACCTTAATGGGATAACAATGCGGAAACCCTGTGAAGGCTTCTTCAAAGAAGAAAGTGGATTTCCACATAATGGGTCCAATAAGAAGATTCAAGGACAAAAAAGAAGCTGTGGAGCCTGAAGCGGATCCAGAAAGGGACCAGAGAACTGTTTTTGCATATCAGATGCCACTGAAGGCGACTGAGAGGGATGTGT...

CDS

2 records

下载 CDS FASTA

LOC131021677
ATGGATTTCGACGAGTACGACTACCTGGAGAAAGCGGTCGAAGAAACTAACGGCCCAACGAAGAAGGAGACTCCAGATACAGAGAAGGAGAGAGAGAGGAGCGAGAAGGGGTACAGGAGGAGAGAGAGGAGTGAAGATGATGAATTTGATGAAGAGGAGAAGGAGAGGAGAAGCAGCAGCAAGAAATCGAGGAATGATGAGAACGGCCGTGACAGAGAGAAGGATAAGGATAGGGACAGGGACAGGGATAGGGATAGGGA...

LOC131021677
ATGGGTCCAATAAGAAGATTCAAGGACAAAAAAGAAGCTGTGGAGCCTGAAGCGGATCCAGAAAGGGACCAGAGAACTGTTTTTGCATATCAGATGCCACTGAAGGCGACTGAGAGGGATGTGTTTGAGTTCTTTTCACAAGCTGGAAAGGTTAGGGATGTTAAATTGATTATGGACCGGAACTCGAGGAGATCAAAAGGTGTCGGGTACATTGAATTCTATGATGCTATGTCTGTACCAATGGCTATAGCTTTATCTGG...

Protein

2 records

下载 Protein FASTA

XP_057806917.1
MDFDEYDYLEKAVEETNGPTKKETPDTEKERERSEKGYRRRERSEDDEFDEEEKERRSSSKKSRNDENGRDREKDKDRDRDRDRDRDRERDKDRDRDRERSSRHRSGERDSERERRSSREKDKERERERDREKERKDKDREKERKERDREKEKERERRERDKEKEKEREREKERERERRSRSRSRLERERERELLRDKEREESRRFKDKKEAVEPEADPERDQRTVFAYQMPLKATERDVFEFFSQAGKVRDVKLIMDRN...

XP_057806918.1
MGPIRRFKDKKEAVEPEADPERDQRTVFAYQMPLKATERDVFEFFSQAGKVRDVKLIMDRNSRRSKGVGYIEFYDAMSVPMAIALSGHLFLGQPVMVKPSEAEKNLVQSNTSAGGSVAGPYGATDRKLYVGNLHFNMTEFQLKQIFEAFGPVELVQLPTDPETGHCKGFGFVQFAQLEHAKAAQSLNGKLEIAGRTIKVSSVTDHVGAQDSGTKTADFDDDDGGGLALNAQSRAMLMAKLDRSGIASSVVGTLGVPALNG...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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