当前解析结果
SmilChr04G002577| 统一新 Gene ID | SmilChr04G002577 |
|---|---|
| 名称 | SmilChr04G002577 |
| 描述 | RNA pseudouridine synthase 3, mitochondrial |
| 染色体 / SeqID | Chr04 / NC_080390.1 |
| 坐标与链方向 | 41139184 - 41143763 / + |
| NCBI Gene ID | LOC131021691 |
|---|---|
| GeneID | 131021691 |
| locus_tag | - |
| NCBI Name | LOC131021691 |
| 原始查询 | SmilChr04G002577 |
| 来源 | GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | RNA pseudouridine synthase 3, mitochondrial |
| 产物 | RNA pseudouridine synthase 3%2C mitochondrial |
| Arabidopsis | AT1G78910 (AT1G78910)Pseudouridine synthase family protein [Source:NCBI gene (formerly Entrezgene);Acc:844229] identity=66.5; qcov=0.996; evalue=0; confidence=high |
| Rice | Os08g0520100- identity=61.9; qcov=0.955; evalue=0; confidence=high |
| GO | GO:0001522 (pseudouridine synthesis); GO:0003723 (RNA binding); GO:0009982 (pseudouridine synthase activity) |
| KEGG | - |
| Pfam | PF00849 (PseudoU_synth_2) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:131021691 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Mitochondrion | 线粒体 | 1.00000 | XP_057806926.1 |
| 2 | Nucleus | 细胞核 | 0.00000 | XP_057806926.1 |
| 3 | Chromosome | 染色体 | 0.00000 | XP_057806926.1 |
| 4 | Centromere | 着丝粒 | 0.00000 | XP_057806926.1 |
| 5 | Chromatin | 染色质 | 0.00000 | XP_057806926.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr4:41140303 |
G |
A |
EMS_canonical_SNV | CDS_variant | 3 | B108,B27,C23 |
Chr4:41140554 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B44 |
Chr4:41141363 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B12 |
Chr4:41141855 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B82 |
Chr4:41142023 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | C60 |
Chr4:41142268 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | C3,D8 |
Chr4:41142306 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B82 |
Chr4:41142331 |
TC |
T |
1bp_deletion | frameshift_variant | 1 | B82 |
Chr4:41142331 |
TC |
T |
1bp_deletion | CDS_variant | 1 | B82 |
Chr4:41142338 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B104 |
Chr4:41142534 |
G |
A |
EMS_canonical_SNV | CDS_variant | 3 | B138,B55,D10 |
Chr4:41142578 |
C |
T |
EMS_canonical_SNV | CDS_variant | 4 | B138,B55,C8,D10 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。
XP_057806926.1PF00849
PseudoU_synth_2 179-350 aa
XP_057806927.1PF00849
PseudoU_synth_2 179-350 aa
XP_057806928.1PF00849
PseudoU_synth_2 179-350 aa
XP_057806929.1PF00849
PseudoU_synth_2 179-350 aa
XP_057806931.1PF00849
PseudoU_synth_2 179-350 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057806926.1 |
Pfam | PF00849 |
PseudoU_synth_2 | Family | 179 | 350 | 7.6e-19 | 69.2 | RNA pseudouridylate synthase |
XP_057806927.1 |
Pfam | PF00849 |
PseudoU_synth_2 | Family | 179 | 350 | 7.6e-19 | 69.2 | RNA pseudouridylate synthase |
XP_057806928.1 |
Pfam | PF00849 |
PseudoU_synth_2 | Family | 179 | 350 | 7.6e-19 | 69.2 | RNA pseudouridylate synthase |
XP_057806929.1 |
Pfam | PF00849 |
PseudoU_synth_2 | Family | 179 | 350 | 7.6e-19 | 69.2 | RNA pseudouridylate synthase |
XP_057806931.1 |
Pfam | PF00849 |
PseudoU_synth_2 | Family | 179 | 350 | 7.6e-19 | 69.2 | RNA pseudouridylate synthase |
每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
5 records
下载 cDNA FASTA5 records
下载 CDS FASTA5 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。