Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr04G002582`

染色体: Chr04 坐标: 41207103-41210873 链方向: + 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr04G002582`
名称	SmilChr04G002582
描述	systemin receptor SR160-like
染色体 / SeqID	Chr04 / NC_080390.1
坐标与链方向	41207103 - 41210873 / `+`

ID 对照

NCBI Gene ID	`LOC131021697`
GeneID	`131021697`
locus_tag	`-`
NCBI Name	`LOC131021697`
原始查询	`SmilChr04G002582`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; KEGG smil; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	systemin receptor SR160-like
产物	systemin receptor SR160-like
Arabidopsis	`AT4G39400` (BRI1) Leucine-rich receptor-like protein kinase family protein [Source:NCBI gene (formerly Entrezgene);Acc:830095] identity=58.7; qcov=1.02; evalue=0; confidence=high
Rice	`Os01g0718300` (D61) - identity=53.2; qcov=0.987; evalue=0; confidence=high
GO	GO:0004672 (protein kinase activity); GO:0005515 (protein binding); GO:0005524 (ATP binding); GO:0005886 (plasma membrane); GO:0006468 (protein phosphorylation)
KEGG	smil04075 (Plant hormone signal transduction - Salvia miltiorrhiza (redroot sage))
Pfam	PF00069 (Pkinase); PF00560 (LRR_1); PF07714 (PK_Tyr_Ser-Thr); PF08263 (LRRNT_2); PF13855 (LRR_8); PF20141 (Island)
InterPro	-
eggNOG	-
NR	GeneID:131021697

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Cell membrane	细胞膜	1.00000	`XP_057806958.1`
2	Nucleus	细胞核	0.00000	`XP_057806958.1`
3	Chromosome	染色体	0.00000	`XP_057806958.1`
4	Centromere	着丝粒	0.00000	`XP_057806958.1`
5	Chromatin	染色质	0.00000	`XP_057806958.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr4:41207428`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	A21,C35
`Chr4:41207474`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	B6,C67
`Chr4:41207558`	`CA`	`C`	1bp_deletion	frameshift_variant	1	B132
`Chr4:41207558`	`CA`	`C`	1bp_deletion	CDS_variant	1	B132
`Chr4:41207592`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	C58
`Chr4:41208047`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B76
`Chr4:41208117`	`C`	`T`	EMS_canonical_SNV	CDS_variant	3	C14,C18,C24
`Chr4:41208278`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	C26
`Chr4:41208611`	`G`	`A`	EMS_canonical_SNV	CDS_variant	3	C14,C18,C24
`Chr4:41208836`	`G`	`A`	EMS_canonical_SNV	CDS_variant	3	B44,B59,C81
`Chr4:41208849`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	B75,B8
`Chr4:41208920`	`G`	`A`	EMS_canonical_SNV	CDS_variant	4	B40,B98,C77,C80

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057806958.1

1119 aa

560

1119

LRRNT_2

LRR_1

LRR_8

LRR_1

Island

LRR_1

Pkinase

PK_Tyr_Ser-Thr

PF08263 LRRNT_2 27-62 aa PF00560 LRR_1 219-239 aa PF00560 LRR_1 288-310 aa PF00560 LRR_1 337-359 aa PF00560 LRR_1 362-381 aa PF00560 LRR_1 389-409 aa PF13855 LRR_8 389-438 aa PF00560 LRR_1 412-433 aa PF00560 LRR_1 459-481 aa PF00560 LRR_1 483-505 aa PF20141 Island 555-619 aa PF00560 LRR_1 626-645 aa PF00560 LRR_1 648-669 aa PF00560 LRR_1 697-711 aa PF00069 Pkinase 835-1100 aa PF07714 PK_Tyr_Ser-Thr 839-1101 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057806958.1`	Pfam	`PF08263`	LRRNT_2	Family	27	62	2.2e-09	38.2	Leucine rich repeat N-terminal domain
`XP_057806958.1`	Pfam	`PF00560`	LRR_1	Repeat	219	239	1.8e-41	131.8	Leucine Rich Repeat
`XP_057806958.1`	Pfam	`PF00560`	LRR_1	Repeat	288	310	1.8e-41	131.8	Leucine Rich Repeat
`XP_057806958.1`	Pfam	`PF00560`	LRR_1	Repeat	337	359	1.8e-41	131.8	Leucine Rich Repeat
`XP_057806958.1`	Pfam	`PF00560`	LRR_1	Repeat	362	381	1.8e-41	131.8	Leucine Rich Repeat
`XP_057806958.1`	Pfam	`PF00560`	LRR_1	Repeat	389	409	1.8e-41	131.8	Leucine Rich Repeat
`XP_057806958.1`	Pfam	`PF13855`	LRR_8	Repeat	389	438	3.9e-41	139.4	Leucine rich repeat
`XP_057806958.1`	Pfam	`PF00560`	LRR_1	Repeat	412	433	1.8e-41	131.8	Leucine Rich Repeat
`XP_057806958.1`	Pfam	`PF00560`	LRR_1	Repeat	459	481	1.8e-41	131.8	Leucine Rich Repeat
`XP_057806958.1`	Pfam	`PF00560`	LRR_1	Repeat	483	505	1.8e-41	131.8	Leucine Rich Repeat
`XP_057806958.1`	Pfam	`PF20141`	Island	Domain	555	619	3.5e-26	91.1	Brassinosteroid receptor island domain
`XP_057806958.1`	Pfam	`PF00560`	LRR_1	Repeat	626	645	1.8e-41	131.8	Leucine Rich Repeat
`XP_057806958.1`	Pfam	`PF00560`	LRR_1	Repeat	648	669	1.8e-41	131.8	Leucine Rich Repeat
`XP_057806958.1`	Pfam	`PF00560`	LRR_1	Repeat	697	711	1.8e-41	131.8	Leucine Rich Repeat
`XP_057806958.1`	Pfam	`PF00069`	Pkinase	Domain	835	1100	9.3e-44	150.5	Protein kinase domain
`XP_057806958.1`	Pfam	`PF07714`	PK_Tyr_Ser-Thr	Domain	839	1101	2.4e-44	152.3	Protein tyrosine and serine/threonine kinase

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

1 records

下载 cDNA FASTA

XM_057950975.1
CGTACGTGGAACACTATATACTCATTTCTGTAATAACAGCCATTACATTACGTATAGAGAGAGAAACTCTCCTGCATTCACTCACATGCCAGCTCTGTAAATTTGTCACCCTGTCCACTTCCCTCATAATTGAACATATATTTCAACAATCTATCCACACTCCTCAATCTATCATAATGGAGTAGATAAACGACTCTAGAGAGAGAAGCAGCCATAAAAATCCTGTCTTGCTCAAAGATGAAGGACCAGCCCTTCTCCTT...

CDS

1 records

下载 CDS FASTA

LOC131021697
ATGAAGGACCAGCCCTTCTCCTTGTATCTGCGCCTACTCTTCTTCCTCATCCTCCTAGCCGCCGCACACGGCCTCGCCGCCGACTCCCGCCGCCTCCTCTCCTTCAAACAGTCACTCCCCGACCCCGATCAGCTCCTCAACTGGCACCCCACGATTTCCCCATGCAATTTCACCGGCGTCTCCTGCAAACACTCGAGAGTTTCCTCAATCGACCTCTCCAATTATCATCTCCACGCCGACTTCTCCAAACTCGCCAAATT...

Protein

1 records

下载 Protein FASTA

XP_057806958.1
MKDQPFSLYLRLLFFLILLAAAHGLAADSRRLLSFKQSLPDPDQLLNWHPTISPCNFTGVSCKHSRVSSIDLSNYHLHADFSKLAKFLLSLQNLESLVLKNANISGAIPKFSCTTSLNSLDLAENAISGPVSDVSTLRLCPALLSLNLSGNLMDSFDEEAVSVPGLTSLQFLDLSYNKISGQNTLSWLLSNEFPQLQHLSLKANNFSTRFPVLSDCSTLQHLDLSSNKFYGEVETSFSACSKLRFLNLTNNQLTGAAPHP...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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