Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr04G002587`

染色体: Chr04 坐标: 41284541-41285859 链方向: - 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr04G002587`
名称	SmilChr04G002587
描述	ras-related protein Rab7-like
染色体 / SeqID	Chr04 / NC_080390.1
坐标与链方向	41284541 - 41285859 / `-`

ID 对照

NCBI Gene ID	`LOC131021701`
GeneID	`131021701`
locus_tag	`-`
NCBI Name	`LOC131021701`
原始查询	`SmilChr04G002587`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; KEGG smil; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	ras-related protein Rab7-like
产物	ras-related protein Rab7-like
Arabidopsis	`AT1G22740` (RABG3B) RAB GTPase homolog G3B [Source:NCBI gene (formerly Entrezgene);Acc:838880] identity=62.5; qcov=1.04; evalue=3.16e-93; confidence=high
Rice	`Os01g0714900` (OsRab7A2) - identity=61.6; qcov=1.04; evalue=9.83e-91; confidence=high
GO	GO:0003924 (GTPase activity); GO:0005525 (GTP binding); GO:0005774 (vacuolar membrane)
KEGG	smil04142 (Lysosome biogenesis - Salvia miltiorrhiza (redroot sage)); smil04144 (Endocytosis - Salvia miltiorrhiza (redroot sage)); smil04145 (Phagocytosis - Salvia miltiorrhiza (redroot sage)); smil04148 (Efferocytosis - Salvia miltiorrhiza (redroot sage))
Pfam	PF00025 (Arf); PF00071 (Ras); PF01926 (MMR_HSR1); PF04670 (Gtr1_RagA); PF08477 (Roc)
InterPro	-
eggNOG	-
NR	GeneID:131021701

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Cytoplasmic vesicle	细胞质囊泡	1.00000	`XP_057806963.1`
2	Golgi apparatus	高尔基体	1.00000	`XP_057806963.1`
3	Endosome	内体	1.00000	`XP_057806963.1`
4	Endosome membrane	内体膜	1.00000	`XP_057806963.1`
5	Trans-golgi network	Trans-golgi network	0.80000	`XP_057806963.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr4:41285252`	`C`	`T`	EMS_canonical_SNV	CDS_variant	3	B75,D4,D6
`Chr4:41285341`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	C77

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057806963.1

216 aa

108

216

Arf

MMR_HSR1

Roc

Gtr1_RagA

Ras

PF00025 Arf 9-134 aa PF01926 MMR_HSR1 10-104 aa PF08477 Roc 10-128 aa PF04670 Gtr1_RagA 10-129 aa PF00071 Ras 10-174 aa

XP_057806964.1

207 aa

104

207

Roc

Ras

Arf

PF08477 Roc 19-119 aa PF00071 Ras 19-165 aa PF00025 Arf 31-125 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057806963.1`	Pfam	`PF00025`	Arf	Domain	9	134	4.4e-11	43.3	ADP-ribosylation factor family
`XP_057806963.1`	Pfam	`PF01926`	MMR_HSR1	Family	10	104	1.2e-07	32.5	50S ribosome-binding GTPase
`XP_057806963.1`	Pfam	`PF08477`	Roc	Domain	10	128	1.5e-33	116.3	Ras of Complex, Roc, domain of DAPkinase
`XP_057806963.1`	Pfam	`PF04670`	Gtr1_RagA	Domain	10	129	5.2e-10	39.8	Gtr1/RagA G protein conserved region
`XP_057806963.1`	Pfam	`PF00071`	Ras	Domain	10	174	6.2e-55	185.9	Ras family
`XP_057806964.1`	Pfam	`PF08477`	Roc	Domain	19	119	2.7e-22	80.0	Ras of Complex, Roc, domain of DAPkinase
`XP_057806964.1`	Pfam	`PF00071`	Ras	Domain	19	165	1e-44	152.7	Ras family
`XP_057806964.1`	Pfam	`PF00025`	Arf	Domain	31	125	4.6e-06	26.9	ADP-ribosylation factor family

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

2 records

下载 cDNA FASTA

XM_057950980.1
AACTTTTCTTCGTTGACATTCATCCACATAAACTTCAATTTACAGACATGGTATGCACGATTATTCCATGACCATCTACAAATCTTTATTTATTTATTTTTATTTTCAAACTCATCAACTCAAGGTTTGTAGTTCCTGTCCAAGATTAGCTAGCATAATTAAACATTGTGTGCAATGACTACGCCAAAAAGAAGTTTGCTCAAGATCATCCTCCTTGGAGACAGTGGGGTGGGAAAGACATCTTTGATGAATCAATATGT...

XM_057950981.1
GACATTCATCCACATAAACTTCAATTTACAGACATGGTATGCACGATTATTCCATGACCATCTACAAATCTTTATTTATTTATTTTTATTTTCAAACTCATCAACTCAAGGTTTGTAGTTCCTGTCCAAGATTAGCTAGCATAATTAAACATTGTGTGCAATGACTACGCCAAAAAGAAGTTTGCTCAAGATCATCCTCCTTGGAGACAGTGGATATGTATACAAGAAATTCAGGGCGCAGTACAAGGCAACGATTGGGG...

CDS

2 records

下载 CDS FASTA

LOC131021701
ATGACTACGCCAAAAAGAAGTTTGCTCAAGATCATCCTCCTTGGAGACAGTGGATATGTATACAAGAAATTCAGGGCGCAGTACAAGGCAACGATTGGGGCTGATTTCGTGACCAAGGAGTTGCAGATTGATGACAATCTTGTGACGTTGCAAATATGGGATACGGCGGGGCAAGAACGGTTTCAGAGCTTGGGCGTGGCGTTCTACAGAGGAGCGGATTGCTGCATTCTTGTGTTCGATGTGAACGTGGTGAAGTCGTT...

LOC131021701
ATGACTACGCCAAAAAGAAGTTTGCTCAAGATCATCCTCCTTGGAGACAGTGGGGTGGGAAAGACATCTTTGATGAATCAATATGTATACAAGAAATTCAGGGCGCAGTACAAGGCAACGATTGGGGCTGATTTCGTGACCAAGGAGTTGCAGATTGATGACAATCTTGTGACGTTGCAAATATGGGATACGGCGGGGCAAGAACGGTTTCAGAGCTTGGGCGTGGCGTTCTACAGAGGAGCGGATTGCTGCATTCTTGT...

Protein

2 records

下载 Protein FASTA

XP_057806963.1
MTTPKRSLLKIILLGDSGVGKTSLMNQYVYKKFRAQYKATIGADFVTKELQIDDNLVTLQIWDTAGQERFQSLGVAFYRGADCCILVFDVNVVKSFETLQMWHQDFLKQLDPSNPESFPFVLIGNKVDVDGGNSRVVSEKTARDWCEAKGNIPYFETSAKEDYNVEDAFLKVAHISLHTHPINIWPLDEEMPSHCDLERVPESISGVDQPRGGCAC

XP_057806964.1
MTTPKRSLLKIILLGDSGYVYKKFRAQYKATIGADFVTKELQIDDNLVTLQIWDTAGQERFQSLGVAFYRGADCCILVFDVNVVKSFETLQMWHQDFLKQLDPSNPESFPFVLIGNKVDVDGGNSRVVSEKTARDWCEAKGNIPYFETSAKEDYNVEDAFLKVAHISLHTHPINIWPLDEEMPSHCDLERVPESISGVDQPRGGCAC

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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