当前解析结果
SmilChr04G002592| 统一新 Gene ID | SmilChr04G002592 |
|---|---|
| 名称 | SmilChr04G002592 |
| 描述 | small GTPase LIP1-like |
| 染色体 / SeqID | Chr04 / NC_080390.1 |
| 坐标与链方向 | 41334692 - 41339669 / + |
| NCBI Gene ID | LOC131021704 |
|---|---|
| GeneID | 131021704 |
| locus_tag | - |
| NCBI Name | LOC131021704 |
| 原始查询 | SmilChr04G002592 |
| 来源 | GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | small GTPase LIP1-like |
| 产物 | small GTPase LIP1-like |
| Arabidopsis | AT5G64813 (LIP1)Ras-related small GTP-binding family protein [Source:NCBI gene (formerly Entrezgene);Acc:836603] identity=70.5; qcov=1.01; evalue=6.21e-172; confidence=high |
| Rice | Os10g0135200- identity=66; qcov=0.961; evalue=9.57e-136; confidence=high |
| GO | GO:0003924 (GTPase activity); GO:0006886 (intracellular protein transport); GO:0012505 (endomembrane system) |
| KEGG | - |
| Pfam | PF00025 (Arf); PF00071 (Ras); PF08477 (Roc) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:131021704 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Cytoplasm | 细胞质 | 0.80000 | XP_057806966.1 |
| 2 | Cytosol | 细胞质基质 | 0.80000 | XP_057806967.1 |
| 3 | Golgi apparatus | 高尔基体 | 0.40000 | XP_057806966.1 |
| 4 | Trans-golgi network | Trans-golgi network | 0.40000 | XP_057806966.1 |
| 5 | Endocytic vesicle | Endocytic vesicle | 0.20000 | XP_057806968.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr4:41335591 |
A |
AT |
1bp_insertion | frameshift_variant | 1 | B50 |
Chr4:41335591 |
A |
AT |
1bp_insertion | CDS_variant | 1 | B50 |
Chr4:41335948 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B127 |
Chr4:41335962 |
A |
AT |
1bp_insertion | frameshift_variant | 3 | B26,B31,C47 |
Chr4:41335962 |
A |
AT |
1bp_insertion | CDS_variant | 3 | B26,B31,C47 |
Chr4:41337662 |
G |
A |
EMS_canonical_SNV | CDS_variant | 5 | A1,B139,C18,C22,C27 |
Chr4:41339359 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | B58,C23 |
Chr4:41339383 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | D11 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。
XP_057806966.1PF08477
Roc 52-158 aa
PF00071
Ras 52-189 aa
XP_057806967.1PF08477
Roc 52-158 aa
PF00071
Ras 52-189 aa
XP_057806968.1PF00025
Arf 21-120 aa
PF08477
Roc 23-136 aa
PF00071
Ras 23-168 aa
XP_057806969.1PF00025
Arf 21-120 aa
PF08477
Roc 23-136 aa
PF00071
Ras 23-168 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057806966.1 |
Pfam | PF08477 |
Roc | Domain | 52 | 158 | 1.9e-14 | 54.7 | Ras of Complex, Roc, domain of DAPkinase |
XP_057806966.1 |
Pfam | PF00071 |
Ras | Domain | 52 | 189 | 9.6e-13 | 48.7 | Ras family |
XP_057806967.1 |
Pfam | PF08477 |
Roc | Domain | 52 | 158 | 1.9e-14 | 54.7 | Ras of Complex, Roc, domain of DAPkinase |
XP_057806967.1 |
Pfam | PF00071 |
Ras | Domain | 52 | 189 | 9.6e-13 | 48.7 | Ras family |
XP_057806968.1 |
Pfam | PF00025 |
Arf | Domain | 21 | 120 | 1.4e-06 | 28.6 | ADP-ribosylation factor family |
XP_057806968.1 |
Pfam | PF08477 |
Roc | Domain | 23 | 136 | 2.5e-18 | 67.1 | Ras of Complex, Roc, domain of DAPkinase |
XP_057806968.1 |
Pfam | PF00071 |
Ras | Domain | 23 | 168 | 1.5e-16 | 61.2 | Ras family |
XP_057806969.1 |
Pfam | PF00025 |
Arf | Domain | 21 | 120 | 1.4e-06 | 28.6 | ADP-ribosylation factor family |
XP_057806969.1 |
Pfam | PF08477 |
Roc | Domain | 23 | 136 | 2.5e-18 | 67.1 | Ras of Complex, Roc, domain of DAPkinase |
XP_057806969.1 |
Pfam | PF00071 |
Ras | Domain | 23 | 168 | 1.4e-16 | 61.2 | Ras family |
每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
4 records
下载 cDNA FASTA4 records
下载 CDS FASTA4 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。