Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr04G002594`

染色体: Chr04 坐标: 41369271-41371661 链方向: + 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr04G002594`
名称	SmilChr04G002594
描述	pentatricopeptide repeat-containing protein At1g02060, chloroplastic
染色体 / SeqID	Chr04 / NC_080390.1
坐标与链方向	41369271 - 41371661 / `+`

ID 对照

NCBI Gene ID	`LOC131021707`
GeneID	`131021707`
locus_tag	`-`
NCBI Name	`LOC131021707`
原始查询	`SmilChr04G002594`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	pentatricopeptide repeat-containing protein At1g02060, chloroplastic
产物	pentatricopeptide repeat-containing protein At1g02060%2C chloroplastic
Arabidopsis	`AT1G02060` (AT1G02060) Tetratricopeptide repeat (TPR)-like superfamily protein [Source:NCBI gene (formerly Entrezgene);Acc:839279] identity=54.4; qcov=0.923; evalue=0; confidence=high
Rice	`Os02g0121900` - identity=41.5; qcov=0.837; evalue=9.13e-143; confidence=medium
GO	GO:0005515 (protein binding)
KEGG	-
Pfam	PF01535 (PPR); PF12854 (PPR_1); PF13041 (PPR_2); PF13812 (PPR_3); PF17177 (PPR_long); PF23276 (TPR_24)
InterPro	-
eggNOG	-
NR	GeneID:131021707

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Mitochondrion	线粒体	1.00000	`XP_057806972.1`
2	Nucleus	细胞核	0.00000	`XP_057806972.1`
3	Chromosome	染色体	0.00000	`XP_057806972.1`
4	Centromere	着丝粒	0.00000	`XP_057806972.1`
5	Chromatin	染色质	0.00000	`XP_057806972.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr4:41369350`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	A1
`Chr4:41369489`	`C`	`T`	EMS_canonical_SNV	CDS_variant	5	B104,B81,C41,C6,C8
`Chr4:41369569`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	A3,C41
`Chr4:41369570`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	B1,B46
`Chr4:41369590`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	A16
`Chr4:41369631`	`A`	`AG`	1bp_insertion	frameshift_variant	53	A11,A14,A18,A19,A21,A23,A3,A8,B100,B109,B125,B126,B133,B137,B139,B19,B27,B3,B33,B35,B47,B49,B51,B54,B59,B69,B70,B74,C14,C18,C19,C20,C3,C4,C40,C41,C42,C45,C47,C54,C63,C65,C70,C72,C77,C79,C80,C81,C82,C85,C87,D10,D4
`Chr4:41369663`	`G`	`A`	EMS_canonical_SNV	stop_gained	27	A15,B10,B108,B120,B129,B24,B27,B28,B67,B71,B81,B85,B86,B89,B9,B93,C26,C32,C33,C43,C56,C62,C68,C73,C77,C82,C9
`Chr4:41369685`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B48
`Chr4:41369728`	`CG`	`C`	1bp_deletion	frameshift_variant	111	A1,A11,A14,A15,A16,A18,A19,A2,A21,A23,A24,A3,A7,A8,B10,B100,B103,B107,B108,B120,B122,B123,B125,B126,B129,B130,B133,B137,B138,B139,B19,B24,B27,B28,B3,B33,B35,B42,B47,B49,B5,B51,B52,B54,B59,B61,B62,B65,B67,B69,B70,B71,B74,B77,B79,B80,B81,B83,B85,B86,B89,B9,B90,B93,B94,C1,C14,C16,C17,C18,C19,C20,C22,C26,C3,C32,C33,C35,C4,C40,C41,C42,C43,C44,C47,C54,C56,C57,C59,C6,C60,C62,C63,C65,C68,C70,C72,C73,C76,C77,C80,C81,C82,C83,C84,C85,C87,C9,D10,D4,D7
`Chr4:41369733`	`C`	`T`	EMS_canonical_SNV	CDS_variant	5	B104,B125,B81,C41,C6
`Chr4:41369741`	`TC`	`T`	1bp_deletion	frameshift_variant	110	A1,A11,A14,A15,A16,A18,A19,A2,A21,A23,A24,A3,A7,A8,B10,B100,B103,B107,B108,B120,B122,B123,B125,B126,B129,B130,B133,B137,B138,B139,B19,B24,B27,B28,B3,B33,B35,B42,B47,B49,B5,B51,B52,B54,B59,B61,B62,B65,B67,B69,B70,B71,B74,B77,B79,B80,B81,B83,B85,B86,B89,B9,B90,B93,B94,C1,C14,C16,C17,C18,C19,C20,C22,C26,C3,C32,C33,C4,C40,C41,C42,C43,C44,C47,C54,C56,C57,C6,C60,C62,C63,C65,C68,C70,C72,C73,C76,C77,C79,C80,C81,C82,C83,C84,C85,C87,C9,D10,D4,D7
`Chr4:41369743`	`AAC`	`A`	2bp_deletion	frameshift_variant	102	A1,A11,A14,A15,A16,A18,A21,A23,A24,A3,A7,A8,B10,B103,B107,B108,B120,B122,B123,B125,B126,B129,B130,B133,B137,B138,B139,B19,B24,B27,B28,B33,B42,B47,B49,B5,B51,B52,B54,B59,B61,B62,B65,B67,B69,B70,B71,B77,B79,B80,B81,B83,B85,B86,B89,B9,B90,B93,B94,C1,C14,C16,C17,C18,C20,C22,C26,C3,C32,C33,C35,C40,C41,C42,C43,C44,C47,C54,C56,C57,C6,C60,C62,C63,C65,C68,C70,C72,C73,C76,C77,C80,C81,C82,C83,C84,C85,C87,C9,D10,D4,D7

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057806972.1

725 aa

362

725

PPR

PPR_2

PPR_3

PPR_long

PPR_2

PPR

PPR_3

PPR_1

PPR_2

PPR

PPR_3

PPR_1

PPR_2

PPR

TPR_24

PPR_3

PPR_1

PPR_2

PPR

PPR_1

PPR

PPR_3

PPR_1

PPR_2

TPR_24

PPR

PPR_long

PPR_3

PPR_1

PPR

PF01535 PPR 163-189 aa PF13041 PPR_2 163-202 aa PF13812 PPR_3 163-202 aa PF17177 PPR_long 177-293 aa PF13041 PPR_2 193-243 aa PF01535 PPR 196-222 aa PF13812 PPR_3 225-274 aa PF12854 PPR_1 226-257 aa PF13041 PPR_2 229-278 aa PF01535 PPR 233-261 aa PF13812 PPR_3 253-312 aa PF12854 PPR_1 261-292 aa PF13041 PPR_2 264-295 aa PF01535 PPR 267-295 aa PF23276 TPR_24 272-367 aa PF13812 PPR_3 297-346 aa PF12854 PPR_1 299-330 aa PF13041 PPR_2 301-349 aa PF01535 PPR 304-334 aa PF12854 PPR_1 332-355 aa PF01535 PPR 339-364 aa PF13812 PPR_3 372-421 aa PF12854 PPR_1 373-403 aa PF13041 PPR_2 374-423 aa PF23276 TPR_24 376-440 aa PF01535 PPR 378-406 aa PF17177 PPR_long 386-479 aa PF13812 PPR_3 397-442 aa PF12854 PPR_1 410-436 aa PF01535 PPR 413-436 aa PF01535 PPR 455-483 aa PF01535 PPR 492-517 aa PF01535 PPR 525-551 aa PF01535 PPR 664-690 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057806972.1`	Pfam	`PF01535`	PPR	Repeat	163	189	2.7e-74	241.1	PPR repeat
`XP_057806972.1`	Pfam	`PF13041`	PPR_2	Repeat	163	202	9e-97	317.8	PPR repeat family
`XP_057806972.1`	Pfam	`PF13812`	PPR_3	Repeat	163	202	1.3e-40	138.0	Pentatricopeptide repeat domain
`XP_057806972.1`	Pfam	`PF17177`	PPR_long	Repeat	177	293	1.1e-26	94.3	Pentacotripeptide-repeat region of PRORP
`XP_057806972.1`	Pfam	`PF13041`	PPR_2	Repeat	193	243	9e-97	317.8	PPR repeat family
`XP_057806972.1`	Pfam	`PF01535`	PPR	Repeat	196	222	2.7e-74	241.1	PPR repeat
`XP_057806972.1`	Pfam	`PF13812`	PPR_3	Repeat	225	274	1.3e-40	138.0	Pentatricopeptide repeat domain
`XP_057806972.1`	Pfam	`PF12854`	PPR_1	Repeat	226	257	4.4e-90	295.8	PPR repeat
`XP_057806972.1`	Pfam	`PF13041`	PPR_2	Repeat	229	278	9e-97	317.8	PPR repeat family
`XP_057806972.1`	Pfam	`PF01535`	PPR	Repeat	233	261	2.7e-74	241.1	PPR repeat
`XP_057806972.1`	Pfam	`PF13812`	PPR_3	Repeat	253	312	1.3e-40	138.0	Pentatricopeptide repeat domain
`XP_057806972.1`	Pfam	`PF12854`	PPR_1	Repeat	261	292	4.4e-90	295.8	PPR repeat
`XP_057806972.1`	Pfam	`PF13041`	PPR_2	Repeat	264	295	9e-97	317.8	PPR repeat family
`XP_057806972.1`	Pfam	`PF01535`	PPR	Repeat	267	295	2.7e-74	241.1	PPR repeat
`XP_057806972.1`	Pfam	`PF23276`	TPR_24	Repeat	272	367	1.9e-33	115.9	Pentatricopeptide repeat-containing protein
`XP_057806972.1`	Pfam	`PF13812`	PPR_3	Repeat	297	346	1.3e-40	138.0	Pentatricopeptide repeat domain
`XP_057806972.1`	Pfam	`PF12854`	PPR_1	Repeat	299	330	4.4e-90	295.8	PPR repeat
`XP_057806972.1`	Pfam	`PF13041`	PPR_2	Repeat	301	349	9e-97	317.8	PPR repeat family
`XP_057806972.1`	Pfam	`PF01535`	PPR	Repeat	304	334	2.7e-74	241.1	PPR repeat
`XP_057806972.1`	Pfam	`PF12854`	PPR_1	Repeat	332	355	4.4e-90	295.8	PPR repeat
`XP_057806972.1`	Pfam	`PF01535`	PPR	Repeat	339	364	2.7e-74	241.1	PPR repeat
`XP_057806972.1`	Pfam	`PF13812`	PPR_3	Repeat	372	421	1.3e-40	138.0	Pentatricopeptide repeat domain
`XP_057806972.1`	Pfam	`PF12854`	PPR_1	Repeat	373	403	4.4e-90	295.8	PPR repeat
`XP_057806972.1`	Pfam	`PF13041`	PPR_2	Repeat	374	423	9e-97	317.8	PPR repeat family
`XP_057806972.1`	Pfam	`PF23276`	TPR_24	Repeat	376	440	1.9e-33	115.9	Pentatricopeptide repeat-containing protein
`XP_057806972.1`	Pfam	`PF01535`	PPR	Repeat	378	406	2.7e-74	241.1	PPR repeat
`XP_057806972.1`	Pfam	`PF17177`	PPR_long	Repeat	386	479	1.1e-26	94.3	Pentacotripeptide-repeat region of PRORP
`XP_057806972.1`	Pfam	`PF13812`	PPR_3	Repeat	397	442	1.3e-40	138.0	Pentatricopeptide repeat domain
`XP_057806972.1`	Pfam	`PF12854`	PPR_1	Repeat	410	436	4.4e-90	295.8	PPR repeat
`XP_057806972.1`	Pfam	`PF01535`	PPR	Repeat	413	436	2.7e-74	241.1	PPR repeat
`XP_057806972.1`	Pfam	`PF01535`	PPR	Repeat	455	483	2.7e-74	241.1	PPR repeat
`XP_057806972.1`	Pfam	`PF01535`	PPR	Repeat	492	517	2.7e-74	241.1	PPR repeat
`XP_057806972.1`	Pfam	`PF01535`	PPR	Repeat	525	551	2.7e-74	241.1	PPR repeat
`XP_057806972.1`	Pfam	`PF01535`	PPR	Repeat	664	690	2.7e-74	241.1	PPR repeat

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

1 records

下载 cDNA FASTA

XM_057950989.1
ACAATGGTAGCTGTAGGGAGAGACATGTAGTTGGCCAGTTGGGCATCTCTTCTCCGACATGGTTCCATTCCCTCTGAACCGCACGAAACTAACAGCAAATCCAAGACCTCAATTTCAGATTTCATATTCCACCTCACACTTCCCTCCCACTCTCAAACATCTATTCAGCAAGCCGCCCACCGCCGTCGCGAATGAAGTCGACGCGCCGCCTCAGAATGCAAATCCTGTCAAAAGCAAGAAAGCCCGAACAATGTCCGGGC...

CDS

1 records

下载 CDS FASTA

LOC131021707
ATGGTTCCATTCCCTCTGAACCGCACGAAACTAACAGCAAATCCAAGACCTCAATTTCAGATTTCATATTCCACCTCACACTTCCCTCCCACTCTCAAACATCTATTCAGCAAGCCGCCCACCGCCGTCGCGAATGAAGTCGACGCGCCGCCTCAGAATGCAAATCCTGTCAAAAGCAAGAAAGCCCGAACAATGTCCGGGCTCATCAACACCACTCCCTGGTCCGCCCACCTCGAAGCCCGCCTCTCAGCCCTCGCCCC...

Protein

1 records

下载 Protein FASTA

XP_057806972.1
MVPFPLNRTKLTANPRPQFQISYSTSHFPPTLKHLFSKPPTAVANEVDAPPQNANPVKSKKARTMSGLINTTPWSAHLEARLSALAPLSQTTFFQTLRRLKTPSKALRFFNWAQDSGFAHNHHSYFMMLEILGRARHLNPARNFLLSIPKKSGNTVPLTDKFFNSLIRSYGDAGLLHESIKVFEAMKSMAVSPSAVTFNSLFLILLKRGRVGKAYQLYDEMLSTFGVKPDSCTFNVLIRGFCKNSMVDEAFRFFREMDKF...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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