当前解析结果
SmilChr04G002618| 统一新 Gene ID | SmilChr04G002618 |
|---|---|
| 名称 | SmilChr04G002618 |
| 描述 | ubiquitin carboxyl-terminal hydrolase 23-like |
| 染色体 / SeqID | Chr04 / NC_080390.1 |
| 坐标与链方向 | 41594955 - 41600347 / + |
| NCBI Gene ID | LOC131021732 |
|---|---|
| GeneID | 131021732 |
| locus_tag | - |
| NCBI Name | LOC131021732 |
| 原始查询 | SmilChr04G002618 |
| 来源 | GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | ubiquitin carboxyl-terminal hydrolase 23-like |
| 产物 | ubiquitin carboxyl-terminal hydrolase 23-like |
| Arabidopsis | AT5G57990 (UBP23)ubiquitin-specific protease 23 [Source:NCBI gene (formerly Entrezgene);Acc:835910] identity=59.8; qcov=0.528; evalue=0; confidence=medium |
| Rice | Os06g0184300 (BIP110)- identity=60.7; qcov=0.486; evalue=2.81e-180; confidence=medium |
| GO | GO:0004197 (cysteine-type endopeptidase activity); GO:0004843 (cysteine-type deubiquitinase activity); GO:0005634 (nucleus); GO:0005829 (cytosol); GO:0016579 (protein deubiquitination) |
| KEGG | - |
| Pfam | PF00443 (UCH); PF13423 (UCH_1) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:131021732 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Nucleus | 细胞核 | 1.00000 | XP_057806992.1 |
| 2 | Chromosome | 染色体 | 0.00000 | XP_057806992.1 |
| 3 | Centromere | 着丝粒 | 0.00000 | XP_057806992.1 |
| 4 | Chromatin | 染色质 | 0.00000 | XP_057806992.1 |
| 5 | Telomere | 端粒 | 0.00000 | XP_057806992.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr4:41596644 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | B1,B22 |
Chr4:41597124 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | B101,C15 |
Chr4:41597197 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | C51 |
Chr4:41598933 |
G |
A |
EMS_canonical_SNV | CDS_variant | 3 | A25,B140,B30 |
Chr4:41599392 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | D11 |
Chr4:41599469 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | D11 |
Chr4:41599496 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | D11 |
Chr4:41599519 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | D11 |
Chr4:41599534 |
ACG |
A |
2bp_deletion | frameshift_variant | 1 | D11 |
Chr4:41599534 |
ACG |
A |
2bp_deletion | CDS_variant | 1 | D11 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。
XP_057806992.1PF13423
UCH_1 94-377 aa
PF00443
UCH 94-395 aa
XP_057806994.1PF13423
UCH_1 94-377 aa
PF00443
UCH 94-395 aa
XP_057806995.1PF13423
UCH_1 94-377 aa
PF00443
UCH 94-395 aa
XP_057806996.1PF13423
UCH_1 94-377 aa
PF00443
UCH 94-395 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057806992.1 |
Pfam | PF13423 |
UCH_1 | Domain | 94 | 377 | 1.1e-19 | 71.9 | Ubiquitin carboxyl-terminal hydrolase |
XP_057806992.1 |
Pfam | PF00443 |
UCH | Family | 94 | 395 | 2.5e-65 | 221.3 | Ubiquitin carboxyl-terminal hydrolase |
XP_057806994.1 |
Pfam | PF13423 |
UCH_1 | Domain | 94 | 377 | 1.1e-19 | 71.9 | Ubiquitin carboxyl-terminal hydrolase |
XP_057806994.1 |
Pfam | PF00443 |
UCH | Family | 94 | 395 | 2.6e-65 | 221.3 | Ubiquitin carboxyl-terminal hydrolase |
XP_057806995.1 |
Pfam | PF13423 |
UCH_1 | Domain | 94 | 377 | 1e-19 | 72.1 | Ubiquitin carboxyl-terminal hydrolase |
XP_057806995.1 |
Pfam | PF00443 |
UCH | Family | 94 | 395 | 2.5e-65 | 221.3 | Ubiquitin carboxyl-terminal hydrolase |
XP_057806996.1 |
Pfam | PF13423 |
UCH_1 | Domain | 94 | 377 | 1e-19 | 72.1 | Ubiquitin carboxyl-terminal hydrolase |
XP_057806996.1 |
Pfam | PF00443 |
UCH | Family | 94 | 395 | 2.5e-65 | 221.3 | Ubiquitin carboxyl-terminal hydrolase |
每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
4 records
下载 cDNA FASTA4 records
下载 CDS FASTA4 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。