Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr04G002624`

染色体: Chr04 坐标: 41639842-41642949 链方向: + 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr04G002624`
名称	SmilChr04G002624
描述	alanine--glyoxylate aminotransferase 2 homolog 1, mitochondrial-like
染色体 / SeqID	Chr04 / NC_080390.1
坐标与链方向	41639842 - 41642949 / `+`

ID 对照

NCBI Gene ID	`LOC131021738`
GeneID	`131021738`
locus_tag	`-`
NCBI Name	`LOC131021738`
原始查询	`SmilChr04G002624`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; KEGG smil; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	alanine--glyoxylate aminotransferase 2 homolog 1, mitochondrial-like
产物	alanine--glyoxylate aminotransferase 2 homolog 1%2C mitochondrial-like
Arabidopsis	`AT4G39660` (AGT2) alanine:glyoxylate aminotransferase 2 [Source:NCBI gene (formerly Entrezgene);Acc:830120] identity=80.5; qcov=1.01; evalue=0; confidence=high
Rice	`Os03g0171900` - identity=77.7; qcov=0.977; evalue=0; confidence=high
GO	GO:0005739 (mitochondrion); GO:0008453 (L-alanine:glyoxylate transaminase activity); GO:0009436 (glyoxylate catabolic process); GO:0019481 (GO:0019481); GO:0030170 (pyridoxal phosphate binding)
KEGG	smil00250 (Alanine, aspartate and glutamate metabolism - Salvia miltiorrhiza (redroot sage)); smil00260 (Glycine, serine and threonine metabolism - Salvia miltiorrhiza (redroot sage)); smil00270 (Cysteine and methionine metabolism - Salvia miltiorrhiza (redroot sage)); smil00280 (Valine, leucine and isoleucine degradation - Salvia miltiorrhiza (redroot sage)); smil00630 (Glyoxylate and dicarboxylate metabolism - Salvia miltiorrhiza (redroot sage)); smil01100 (Metabolic pathways - Salvia miltiorrhiza (redroot sage)); smil01110 (Biosynthesis of secondary metabolites - Salvia miltiorrhiza (redroot sage)); smil01200 (Carbon metabolism - Salvia miltiorrhiza (redroot sage)); smil01210 (2-Oxocarboxylic acid metabolism - Salvia miltiorrhiza (redroot sage))
Pfam	PF00202 (Aminotran_3)
InterPro	-
eggNOG	-
NR	GeneID:131021738

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Mitochondrion	线粒体	1.00000	`XP_057807001.1`
2	Mitochondrion matrix	线粒体基质	0.80000	`XP_057807001.1`
3	Nucleus	细胞核	0.00000	`XP_057807001.1`
4	Chromosome	染色体	0.00000	`XP_057807001.1`
5	Centromere	着丝粒	0.00000	`XP_057807001.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr4:41640049`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B27
`Chr4:41640104`	`C`	`T`	EMS_canonical_SNV	CDS_variant	4	B44,B59,C57,C81
`Chr4:41640228`	`C`	`T`	EMS_canonical_SNV	CDS_variant	4	B44,B59,C57,C81
`Chr4:41640809`	`C`	`T`	EMS_canonical_SNV	CDS_variant	4	B138,B14,C29,C86
`Chr4:41641640`	`C`	`T`	EMS_canonical_SNV	CDS_variant	3	B87,C28,C78
`Chr4:41641710`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B121
`Chr4:41642282`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B45
`Chr4:41642590`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	C77
`Chr4:41642591`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B96
`Chr4:41642645`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	B93,B96
`Chr4:41642711`	`T`	`TCC`	2bp_insertion	frameshift_variant	11	A2,B102,B11,B118,B21,B45,B6,B8,B86,C72,C83

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057807001.1

479 aa

240

479

Aminotran_3

PF00202 Aminotran_3 71-456 aa

XP_057807002.1

469 aa

234

469

Aminotran_3

PF00202 Aminotran_3 71-464 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057807001.1`	Pfam	`PF00202`	Aminotran_3	Domain	71	456	2.2e-85	287.5	Aminotransferase class-III
`XP_057807002.1`	Pfam	`PF00202`	Aminotran_3	Domain	71	464	8.6e-87	292.2	Aminotransferase class-III

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

2 records

下载 cDNA FASTA

XM_057951019.1
GGGCAAACCCCAGTTGGGAGTGTGGAAGGAATCTTTATTGGTTGAGCTGACTGTAATCCACCTCCCTAATCTCCACCTCAGCCTCCCTCATCATTTCCCCAATCCCTATAATTAATTCTTAAACTCTGTCATTCTCAAAAGAACAAAAAAATTCTTACCACTGTGTGTGAATATCATCTTTGATGGGGATGGAAAGGAAGCTTTTTAGTGGGGCACGGCGGTGGCTTTGCACCTCTAATGTGGGACTGCAGCGCAGCTCC...

XM_057951018.1
AGTGTGGAAGGAATCTTTATTGGTTGAGCTGACTGTAATCCACCTCCCTAATCTCCACCTCAGCCTCCCTCATCATTTCCCCAATCCCTATAATTAATTCTTAAACTCTGTCATTCTCAAAAGAACAAAAAAATTCTTACCACTGTGTGTGAATATCATCTTTGATGGGGATGGAAAGGAAGCTTTTTAGTGGGGCACGGCGGTGGCTTTGCACCTCTAATGTGGGACTGCAGCGCAGCTCCTCCGCCGCCTCTCCGCCG...

CDS

2 records

下载 CDS FASTA

LOC131021738
ATGGGGATGGAAAGGAAGCTTTTTAGTGGGGCACGGCGGTGGCTTTGCACCTCTAATGTGGGACTGCAGCGCAGCTCCTCCGCCGCCTCTCCGCCGCTTCTGCCGCCTTTCGACTACGATCCGAAGCCGTATGACGGCCCTCGGGCTGATGAGGTTATGGAGAAGCGCAAGAGATATTTGGGCCCCTCACTTTTTCACTACTATCACAACCCCCTGAATATAGTTGAAGGGAAAATGCAGTACTTGTACGATGAAAATGG...

Protein

2 records

下载 Protein FASTA

XP_057807001.1
MGMERKLFSGARRWLCTSNVGLQRSSSAASPPLLPPFDYDPKPYDGPRADEVMEKRKRYLGPSLFHYYHNPLNIVEGKMQYLYDENGRRYLDAFAGIVTVSCGHCHPDILNAIVEQSKLLQHTTTIYLHHAIADFAEALASKMPGNLKVVYFVNSGTEANELAMLMARLYSRNLGMIALRNAYHGGSSNTIGLTALNTWKYPIPQGEIHHVLNPNPYRGIFGPDAKRYAEDVQDHIDHGTSGKVAGFIAETIQGVGGAVE...

XP_057807002.1
MGMERKLFSGARRWLCTSNVGLQRSSSAASPPLLPPFDYDPKPYDGPRADEVMEKRKRYLGPSLFHYYHNPLNIVEGKMQYLYDENGRRYLDAFAGIVTVSCGHCHPDILNAIVEQSKLLQHTTTIYLHHAIADFAEALASKMPGNLKVVYFVNSGTEANELAMLMARLYSRNLGMIALRNAYHGGSSNTIGLTALNTWKYPIPQGEIHHVLNPNPYRGIFGPDAKRYAEDVQDHIDHGTSGKVAGFIAETIQGVGGAVE...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

下载 upstream 下载 downstream 下载 upstream + gene + downstream

JBrowse

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