Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID,以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因,再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。
示例

当前解析结果

SmilChr04G002633

染色体: Chr04 坐标: 41733032-41736387 链方向: + 类型: protein_coding

基本信息

统一新 Gene IDSmilChr04G002633
名称SmilChr04G002633
描述glucan endo-1,3-beta-glucosidase 14-like
染色体 / SeqIDChr04 / NC_080390.1
坐标与链方向41733032 - 41736387 / +

ID 对照

NCBI Gene IDLOC131021747
GeneID131021747
locus_tag-
NCBI NameLOC131021747
原始查询SmilChr04G002633

查看完整 ID 对照表

功能注释

来源GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述glucan endo-1,3-beta-glucosidase 14-like
产物glucan endo-1%2C3-beta-glucosidase 14-like
ArabidopsisAT2G27500 (AT2G27500)
Glycosyl hydrolase superfamily protein [Source:NCBI gene (formerly Entrezgene);Acc:817295]
identity=66.1; qcov=0.903; evalue=9.97e-180; confidence=high
RiceOs04g0412300 (OSJNBa0073L04.8)
-
identity=61.4; qcov=0.944; evalue=1.45e-168; confidence=high
GOGO:0004553 (hydrolase activity, hydrolyzing O-glycosyl compounds); GO:0005886 (plasma membrane); GO:0005975 (carbohydrate metabolic process)
KEGG-
PfamPF00332 (Glyco_hydro_17)
InterPro-
eggNOG-
NRGeneID:131021747

打开注释模块

亚细胞定位 Top 5

Rank定位位置中文ScoreProtein ID
1 Cell membrane 细胞膜 0.80000 XP_057807011.1
2 Cell wall 细胞壁 0.20000 XP_057807011.1
3 Nucleus 细胞核 0.00000 XP_057807011.1
4 Chromosome 染色体 0.00000 XP_057807011.1
5 Centromere 着丝粒 0.00000 XP_057807011.1

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变;完整结果可进入 EMS 突变库继续筛选或下载。

位置 REF ALT 类型 影响 携带材料数 材料
Chr4:41733382 T TCC 2bp_insertion frameshift_variant 3 A24,B33,B82
Chr4:41733382 T TCC 2bp_insertion CDS_variant 3 A24,B33,B82
Chr4:41734179 C T EMS_canonical_SNV CDS_variant 3 A16,B47,C64
Chr4:41734584 C T EMS_canonical_SNV CDS_variant 2 B137,B21
Chr4:41734804 C T EMS_canonical_SNV CDS_variant 2 B58,C52
Chr4:41734830 G A EMS_canonical_SNV CDS_variant 1 C43
Chr4:41734959 G A EMS_canonical_SNV CDS_variant 5 A3,A9,B18,B61,B65

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan;位置为对应蛋白序列上的氨基酸坐标。

XP_057807011.1
392 aa
N
1
196
392
Glyco_hydro_17
C
PF00332 Glyco_hydro_17 40-356 aa
Protein ID 来源 结构域编号 结构域名称 类型 起始 aa 终止 aa E-value Score 说明
XP_057807011.1 Pfam PF00332 Glyco_hydro_17 Domain 40 356 3.1e-86 290.5 Glycosyl hydrolases family 17

cDNA / CDS / Protein 序列

下载基因组 DNA(仅基因区域)

每个公开基因均提供参考注释对应的转录本序列;蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

2 records

下载 cDNA FASTA
XR_009101053.1
AATCATGATTAAGACTTTCAAAAAGTTGGAGAAAAGAAAAGAAAAAAATAGGGAATCAGATTTCATTATAGAAACAGATGACTCCAGTTTTCTTACGTGGAAATAAACAACTGGAAAACATGTTCAAAAAAATCTTGGCAACTATGCAGCTTTCTTTCATTTTAATTTAAAAGCTAATTTTGCATCAACTTCACTTTCACACATTGTGAAATCTAATTTCTTATTTTAAATTGTTTCCAAATTATTATATTTGTGTGTAT...
XM_057951028.1
GGGAATCAGATTTCATTATAGAAACAGATGACTCCAGTTTTCTTACGTGGAAATAAACAACTGGAAAACATGTTCAAAAAAATCTTGGCAACTATGCAGCTTTCTTTCATTTTAATTTAAAAGCTAATTTTGCATCAACTTCACTTTCACACATTGTGAAATCTAATTTCTTATTTTAAATTGTTTCCAAATTATTATATTTGTGTGTATATATATACAGACATCGAAAAACAAAGATGTGCCGTGGCAGGAATTTTACA...

CDS

1 records

下载 CDS FASTA
LOC131021747
ATGTGCCGTGGCAGGAATTTTACAGAGAGTTGGCATATAGCTATGGCCACCCTTTGCAGGGTTCTTCTCCTCCTCCTCATTTTTTCAGATTCATTTGTTAGCATCCGTGGGGTCGGAGTGGGAATCAACTACGGGCAGATCGCCAACAATCTCCCCGCCCCATCACGCGTGGCCTTCCTCTTGAGCTCTCTCAACATAAGCAGAGTGAAGCTCTACGACGCAGATCCAACCGTGCTCTCAGCATTCGCCAACACAGACGT...

Protein

1 records

下载 Protein FASTA
XP_057807011.1
MCRGRNFTESWHIAMATLCRVLLLLLIFSDSFVSIRGVGVGINYGQIANNLPAPSRVAFLLSSLNISRVKLYDADPTVLSAFANTDVEFVIGLGNEYLQKISDQAQAQAWVEQHVKPYTSQTKIRCITVGNEVLTGNNTQLMSYLLPAMQSVNAAVTNLGLSKEIYVTTAHSFAILSSSFPPSAGAFRQDLAEYIQSILNFHTQTHSPFLINAYPFFAYKDSPDEISLSYALFQPSQGMVDSNTNLHYDNMLYAQIDAVY...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补,使最终 FASTA 为转录方向 5′→3′。

下载 upstream 下载 downstream 下载 upstream + gene + downstream

JBrowse

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