Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr04G002634`

染色体: Chr04 坐标: 41742835-41745637 链方向: - 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr04G002634`
名称	SmilChr04G002634
描述	probable calcium-binding protein CML48
染色体 / SeqID	Chr04 / NC_080390.1
坐标与链方向	41742835 - 41745637 / `-`

ID 对照

NCBI Gene ID	`LOC131021748`
GeneID	`131021748`
locus_tag	`-`
NCBI Name	`LOC131021748`
原始查询	`SmilChr04G002634`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; KEGG smil; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	probable calcium-binding protein CML48
产物	probable calcium-binding protein CML48
Arabidopsis	`AT2G27480` (AT2G27480) Calcium-binding EF-hand family protein [Source:NCBI gene (formerly Entrezgene);Acc:817293] identity=44.1; qcov=0.903; evalue=1.03e-53; confidence=medium
Rice	`Os08g0558100` - identity=56.9; qcov=0.699; evalue=1.8e-53; confidence=high
GO	GO:0005509 (calcium ion binding)
KEGG	smil04626 (Plant-pathogen interaction - Salvia miltiorrhiza (redroot sage))
Pfam	PF00036 (EF-hand_1); PF13202 (EF-hand_5); PF13405 (EF-hand_6)
InterPro	-
eggNOG	-
NR	GeneID:131021748

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Cytoplasm	细胞质	1.00000	`XP_057807012.1`
2	Nucleus	细胞核	0.20000	`XP_057807013.1`
3	Chromosome	染色体	0.00000	`XP_057807012.1`
4	Centromere	着丝粒	0.00000	`XP_057807012.1`
5	Chromatin	染色质	0.00000	`XP_057807012.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr4:41744988`	`AT`	`A`	1bp_deletion	frameshift_variant	1	D2
`Chr4:41744988`	`AT`	`A`	1bp_deletion	CDS_variant	1	D2
`Chr4:41745032`	`C`	`T`	EMS_canonical_SNV	CDS_variant	3	B13,B78,C80
`Chr4:41745108`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	D10
`Chr4:41745279`	`GGA`	`G`	2bp_deletion	frameshift_variant	1	B40
`Chr4:41745279`	`GGA`	`G`	2bp_deletion	CDS_variant	1	B40
`Chr4:41745296`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	D10
`Chr4:41745375`	`AT`	`A`	1bp_deletion	frameshift_variant	2	B137,B19
`Chr4:41745375`	`AT`	`A`	1bp_deletion	CDS_variant	2	B137,B19

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057807012.1

246 aa

123

246

EF-hand_5

EF-hand_6

EF-hand_1

EF-hand_5

PF13202 EF-hand_5 78-99 aa PF13405 EF-hand_6 144-173 aa PF00036 EF-hand_1 145-171 aa PF13202 EF-hand_5 147-167 aa

XP_057807013.1

206 aa

103

206

EF-hand_5

EF-hand_6

EF-hand_1

EF-hand_5

PF13202 EF-hand_5 78-99 aa PF13405 EF-hand_6 144-173 aa PF00036 EF-hand_1 145-171 aa PF13202 EF-hand_5 147-167 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057807012.1`	Pfam	`PF13202`	EF-hand_5	Domain	78	99	3.3e-12	46.0	EF hand
`XP_057807012.1`	Pfam	`PF13405`	EF-hand_6	Domain	144	173	8.4e-15	53.7	EF-hand domain
`XP_057807012.1`	Pfam	`PF00036`	EF-hand_1	Domain	145	171	4.1e-14	51.7	EF hand domain
`XP_057807012.1`	Pfam	`PF13202`	EF-hand_5	Domain	147	167	3.3e-12	46.0	EF hand
`XP_057807013.1`	Pfam	`PF13202`	EF-hand_5	Domain	78	99	2.1e-12	46.6	EF hand
`XP_057807013.1`	Pfam	`PF13405`	EF-hand_6	Domain	144	173	5.9e-15	54.2	EF-hand domain
`XP_057807013.1`	Pfam	`PF00036`	EF-hand_1	Domain	145	171	3.1e-14	52.1	EF hand domain
`XP_057807013.1`	Pfam	`PF13202`	EF-hand_5	Domain	147	167	2.1e-12	46.6	EF hand

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

2 records

下载 cDNA FASTA

XM_057951029.1
ATGTTTCGTTTTCCATTACAAAATAAACTCAATTTATCTTCACGAAGTGACATTTTGTTTTTATAAGAGATATAGTATATGTATATATAATTTTTTTTTGAAGGAAGATATAGTGCTATATTTTTTTATTCAAACAAAACACACTAATTTAGTCTTTATTTTCCCTATCCTCCTTCTCTGTTCTTTCTCTGAGACAACAATATACTCGAAAACTAATTTAAGAAAAAATAAAAAATCAATTTGAGAAAAATTTCTGTGGA...

XM_057951030.1
TTTGTTTTTATAAGAGATATAGTATATGTATATATAATTTTTTTTTGAAGGAAGATATAGTGCTATATTTTTTTATTCAAACAAAACACACTAATTTAGTCTTTATTTTCCCTATCCTCCTTCTCTGTTCTTTCTCTGAGACAACAATATACTCGAAAACTAATTTAAGAAAAAATAAAAAATCAATTTGAGAAAAATTTCTGTGGAAATGTCCGCCTCCGGCAACAAACCATCAGCCCCACCCGCACCCGACCCGGACG...

CDS

2 records

下载 CDS FASTA

LOC131021748
ATGTCCGCCTCCGGCAACAAACCATCAGCCCCACCCGCACCCGACCCGGACGAGCCCCGGGTCGCCTACCCGTATCGGCCGTCCCCGCCCGATGCTCCGATCGCCTACACCCACACCCACACCCACAGCGGCTCCTTCGGGTCGGGTTCGCCTCCTCAAGGCTACGGGTATTACCAGTCTCCGCCGACGAACGCGTACAGCTCGTTTCCCCCGGGCACCCACCCGGATGTGATCCGGAGCTTCCAGATGGTGGATAGGAA...

Protein

2 records

下载 Protein FASTA

XP_057807012.1
MSASGNKPSAPPAPDPDEPRVAYPYRPSPPDAPIAYTHTHTHSGSFGSGSPPQGYGYYQSPPTNAYSSFPPGTHPDVIRSFQMVDRNQNGYIEEKELQEALAWNYQRFSPSTLRLLIFLFRNPRESSSIIGPKEFADIWSCLGQWRAIFERFDRDRSGKIDAMELRDALYSLGYAVPPSVLQVLISRYDDGSRRPVELSFDSFIEGGMIVKGLTEKFKEKDTRYTGSATLTYETFMSMILPFLVAD

XP_057807013.1
MSASGNKPSAPPAPDPDEPRVAYPYRPSPPDAPIAYTHTHTHSGSFGSGSPPQGYGYYQSPPTNAYSSFPPGTHPDVIRSFQMVDRNQNGYIEEKELQEALAWNYQRFSPSTLRLLIFLFRNPRESSSIIGPKEFADIWSCLGQWRAIFERFDRDRSGKIDAMELRDALYSLGYAVPPSVLQVLISRYDDGSRRPVELSFDSFIEV

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

下载 upstream 下载 downstream 下载 upstream + gene + downstream

JBrowse

跳转到基因组浏览器