Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr04G002668`

染色体: Chr04 坐标: 42065121-42068251 链方向: + 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr04G002668`
名称	SmilChr04G002668
描述	alanine--glyoxylate aminotransferase 2 homolog 1, mitochondrial-like
染色体 / SeqID	Chr04 / NC_080390.1
坐标与链方向	42065121 - 42068251 / `+`

ID 对照

NCBI Gene ID	`LOC131021776`
GeneID	`131021776`
locus_tag	`-`
NCBI Name	`LOC131021776`
原始查询	`SmilChr04G002668`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; KEGG smil; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	alanine--glyoxylate aminotransferase 2 homolog 1, mitochondrial-like
产物	alanine--glyoxylate aminotransferase 2 homolog 1%2C mitochondrial-like
Arabidopsis	`AT4G39660` (AGT2) alanine:glyoxylate aminotransferase 2 [Source:NCBI gene (formerly Entrezgene);Acc:830120] identity=80.5; qcov=1.01; evalue=0; confidence=high
Rice	`Os03g0171900` - identity=77.7; qcov=0.977; evalue=0; confidence=high
GO	GO:0005739 (mitochondrion); GO:0008453 (L-alanine:glyoxylate transaminase activity); GO:0009436 (glyoxylate catabolic process); GO:0019481 (GO:0019481); GO:0030170 (pyridoxal phosphate binding)
KEGG	smil00250 (Alanine, aspartate and glutamate metabolism - Salvia miltiorrhiza (redroot sage)); smil00260 (Glycine, serine and threonine metabolism - Salvia miltiorrhiza (redroot sage)); smil00270 (Cysteine and methionine metabolism - Salvia miltiorrhiza (redroot sage)); smil00280 (Valine, leucine and isoleucine degradation - Salvia miltiorrhiza (redroot sage)); smil00630 (Glyoxylate and dicarboxylate metabolism - Salvia miltiorrhiza (redroot sage)); smil01100 (Metabolic pathways - Salvia miltiorrhiza (redroot sage)); smil01110 (Biosynthesis of secondary metabolites - Salvia miltiorrhiza (redroot sage)); smil01200 (Carbon metabolism - Salvia miltiorrhiza (redroot sage)); smil01210 (2-Oxocarboxylic acid metabolism - Salvia miltiorrhiza (redroot sage))
Pfam	PF00202 (Aminotran_3)
InterPro	-
eggNOG	-
NR	GeneID:131021776

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Mitochondrion	线粒体	1.00000	`XP_057807044.1`
2	Mitochondrion matrix	线粒体基质	0.80000	`XP_057807044.1`
3	Peroxisome	过氧化物酶体	0.40000	`XP_057807044.1`
4	Nucleus	细胞核	0.00000	`XP_057807045.1`
5	Chromosome	染色体	0.00000	`XP_057807045.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr4:42065463`	`G`	`A`	EMS_canonical_SNV	CDS_variant	5	A7,B35,B55,B7,C23
`Chr4:42066082`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B14
`Chr4:42067917`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	B56,B96
`Chr4:42067974`	`CTT`	`C`	2bp_deletion	frameshift_variant	31	A11,A16,A9,B110,B111,B130,B134,B135,B139,B17,B20,B24,B55,B57,B58,B60,B64,B9,B91,C20,C25,C27,C37,C41,C49,C57,C6,C62,C8,D2,D8
`Chr4:42068005`	`TCC`	`T`	2bp_deletion	frameshift_variant	16	A18,A23,A24,A25,B124,B125,B127,B21,B30,B35,B71,B81,C33,C39,C42,D11

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057807044.1

489 aa

244

489

Aminotran_3

PF00202 Aminotran_3 71-456 aa

XP_057807045.1

469 aa

234

469

Aminotran_3

PF00202 Aminotran_3 71-464 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057807044.1`	Pfam	`PF00202`	Aminotran_3	Domain	71	456	2.4e-85	287.4	Aminotransferase class-III
`XP_057807045.1`	Pfam	`PF00202`	Aminotran_3	Domain	71	464	8.6e-87	292.2	Aminotransferase class-III

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

2 records

下载 cDNA FASTA

XM_057951061.1
GGGCAAACCCCAGTTGGGAGTGTGGAAGGAATCTTTATGGTTGAGCTGACTGTAATCCACCTCCCTAATCTCCACCTCAGCCTCCCTCATCATTTCCCCAATCCCTATAATTAATTCTTAAACTCTGTCATTCTCAAAAGAACAAAAAAATTCTTACCACTGTGTGTGAATATCATCTTTGATGGGGATGGAAAGGAAGCTTTTTAGTGGGGCACGGCGGTGGCTTTGCACCTCTAATGTGGGACTGCAGCGCAGCTCCT...

XM_057951062.1
GGGCAAACCCCAGTTGGGAGTGTGGAAGGAATCTTTATGGTTGAGCTGACTGTAATCCACCTCCCTAATCTCCACCTCAGCCTCCCTCATCATTTCCCCAATCCCTATAATTAATTCTTAAACTCTGTCATTCTCAAAAGAACAAAAAAATTCTTACCACTGTGTGTGAATATCATCTTTGATGGGGATGGAAAGGAAGCTTTTTAGTGGGGCACGGCGGTGGCTTTGCACCTCTAATGTGGGACTGCAGCGCAGCTCCT...

CDS

2 records

下载 CDS FASTA

LOC131021776
ATGGGGATGGAAAGGAAGCTTTTTAGTGGGGCACGGCGGTGGCTTTGCACCTCTAATGTGGGACTGCAGCGCAGCTCCTCCGCCGCCTCTCCGCCGCTTCTGCCGCCTTTCGACTACGATCCGAAGCCGTATGATGGCCCTCGGGCTGATGAGGTTATGGAGAAGCGCAAGAGATATTTGGGCCCCTCACTTTTTCACTACTATCACAACCCCCTGAATATAGTTGAAGGGAAAATGCAGTACTTGTACGATGAAAATGG...

Protein

2 records

下载 Protein FASTA

XP_057807044.1
MGMERKLFSGARRWLCTSNVGLQRSSSAASPPLLPPFDYDPKPYDGPRADEVMEKRKRYLGPSLFHYYHNPLNIVEGKMQYLYDENGRRYLDAFAGIVTVSCGHCHPDILNAIVEQSKLLQHTTTIYLHHAIADFAEALASKMPGNLKVVYFVNSGTEANELAMLMARLYSRNLGMIALRNAYHGGSSNTIGLTALNTWKYPIPQGEIHHVLNPNPYRGIFGPDAKRYAEDVQDHIDHGTSGKVAGFIAETIQGVGGAVE...

XP_057807045.1
MGMERKLFSGARRWLCTSNVGLQRSSSAASPPLLPPFDYDPKPYDGPRADEVMEKRKRYLGPSLFHYYHNPLNIVEGKMQYLYDENGRRYLDAFAGIVTVSCGHCHPDILNAIVEQSKLLQHTTTIYLHHAIADFAEALASKMPGNLKVVYFVNSGTEANELAMLMARLYSRNLGMIALRNAYHGGSSNTIGLTALNTWKYPIPQGEIHHVLNPNPYRGIFGPDAKRYAEDVQDHIDHGTSGKVAGFIAETIQGVGGAVE...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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JBrowse

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