当前解析结果
SmilChr04G002687| 统一新 Gene ID | SmilChr04G002687 |
|---|---|
| 名称 | SmilChr04G002687 |
| 描述 | heavy metal-associated isoprenylated plant protein 47-like |
| 染色体 / SeqID | Chr04 / NC_080390.1 |
| 坐标与链方向 | 42298733 - 42299601 / - |
| NCBI Gene ID | LOC131021794 |
|---|---|
| GeneID | 131021794 |
| locus_tag | - |
| NCBI Name | LOC131021794 |
| 原始查询 | SmilChr04G002687 |
| 来源 | GFF basic annotation; NCBI GO GAF; Arabidopsis/Rice homolog |
|---|---|
| 描述 | heavy metal-associated isoprenylated plant protein 47-like |
| 产物 | heavy metal-associated isoprenylated plant protein 47-like |
| Arabidopsis | AT4G05030 (AT4G05030)Copper transport protein family [Source:NCBI gene (formerly Entrezgene);Acc:825845] identity=47.9; qcov=0.628; evalue=5.08e-15; confidence=low |
| Rice | Os02g0584700- identity=50.5; qcov=0.823; evalue=1.76e-16; confidence=low |
| GO | GO:0046872 (metal ion binding) |
| KEGG | - |
| Pfam | - |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:131021794 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Cytoplasm | 细胞质 | 1.00000 | XP_057807068.1 |
| 2 | Cytosol | 细胞质基质 | 0.80000 | XP_057807068.1 |
| 3 | Nucleus | 细胞核 | 0.60000 | XP_057807068.1 |
| 4 | Chromosome | 染色体 | 0.00000 | XP_057807068.1 |
| 5 | Centromere | 着丝粒 | 0.00000 | XP_057807068.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变;完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr4:42298981 |
AG |
A |
1bp_deletion | frameshift_variant | 1 | B130 |
Chr4:42298981 |
AG |
A |
1bp_deletion | CDS_variant | 1 | B130 |
Chr4:42299065 |
C |
T |
EMS_canonical_SNV | CDS_variant | 3 | B108,B27,C55 |
Chr4:42299135 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | A10,A2 |
Chr4:42299183 |
C |
T |
EMS_canonical_SNV | CDS_variant | 5 | B100,B104,B33,B68,B75 |
Chr4:42299361 |
GA |
G |
1bp_deletion | frameshift_variant | 2 | B114,B126 |
Chr4:42299361 |
GA |
G |
1bp_deletion | CDS_variant | 2 | B114,B126 |
每个公开基因均提供参考注释对应的转录本序列;蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补,使最终 FASTA 为转录方向 5′→3′。