Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr04G002688`

染色体: Chr04 坐标: 42306011-42310324 链方向: + 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr04G002688`
名称	SmilChr04G002688
描述	uncharacterized SmilChr04G002688
染色体 / SeqID	Chr04 / NC_080390.1
坐标与链方向	42306011 - 42310324 / `+`

ID 对照

NCBI Gene ID	`LOC131021795`
GeneID	`131021795`
locus_tag	`-`
NCBI Name	`LOC131021795`
原始查询	`SmilChr04G002688`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; KEGG smil; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	OSJNBb0058B20.19; symbol=OSJNBb0058B20.19; hit=Os10g0397200; species=rice; confidence=high
产物	OSJNBb0058B20.19; symbol=OSJNBb0058B20.19; hit=Os10g0397200; species=rice; confidence=high
Arabidopsis	`AT4G20330` (AT4G20330) Transcription initiation factor TFIIE, beta subunit [Source:NCBI gene (formerly Entrezgene);Acc:827781] identity=57.5; qcov=0.986; evalue=1.71e-102; confidence=high
Rice	`Os10g0397200` (OSJNBb0058B20.19) - identity=62.4; qcov=0.989; evalue=4.95e-119; confidence=high
GO	GO:0005673 (transcription factor TFIIE complex); GO:0006367 (transcription initiation at RNA polymerase II promoter)
KEGG	smil03022 (Basal transcription factors - Salvia miltiorrhiza (redroot sage))
Pfam	PF18121 (TFA2_Winged_2)
InterPro	-
eggNOG	-
NR	GeneID:131021795

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Nucleus	细胞核	1.00000	`XP_057807069.1`
2	Nucleoplasm	核质	0.40000	`XP_057807069.1`
3	Nucleolus	核仁	0.20000	`XP_057807069.1`
4	Chromosome	染色体	0.00000	`XP_057807069.1`
5	Centromere	着丝粒	0.00000	`XP_057807069.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr4:42307000`	`C`	`T`	EMS_canonical_SNV	stop_gained	2	C41,C6
`Chr4:42307000`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	C41,C6
`Chr4:42307025`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	A10
`Chr4:42307048`	`G`	`A`	EMS_canonical_SNV	CDS_variant	5	B59,C57,C58,C81,D2
`Chr4:42307067`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B108
`Chr4:42307143`	`G`	`A`	EMS_canonical_SNV	CDS_variant	3	B122,C11,C69
`Chr4:42307158`	`T`	`TA`	1bp_insertion	frameshift_variant	1	B91
`Chr4:42307158`	`T`	`TA`	1bp_insertion	CDS_variant	1	B91
`Chr4:42307227`	`C`	`T`	EMS_canonical_SNV	CDS_variant	4	B16,C40,C44,C52
`Chr4:42309171`	`C`	`CG`	1bp_insertion	frameshift_variant	4	B135,B48,B66,C49
`Chr4:42309171`	`C`	`CG`	1bp_insertion	CDS_variant	4	B135,B48,B66,C49
`Chr4:42309278`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	B108,B24

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057807069.1

282 aa

141

282

TFA2_Winged_2

PF18121 TFA2_Winged_2 136-192 aa

XP_057807070.1

282 aa

141

282

TFA2_Winged_2

PF18121 TFA2_Winged_2 136-192 aa

XP_057807071.1

282 aa

141

282

TFA2_Winged_2

PF18121 TFA2_Winged_2 136-192 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057807069.1`	Pfam	`PF18121`	TFA2_Winged_2	Domain	136	192	7.8e-16	58.2	TFA2 Winged helix domain 2
`XP_057807070.1`	Pfam	`PF18121`	TFA2_Winged_2	Domain	136	192	7.8e-16	58.2	TFA2 Winged helix domain 2
`XP_057807071.1`	Pfam	`PF18121`	TFA2_Winged_2	Domain	136	192	7.8e-16	58.2	TFA2 Winged helix domain 2

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

3 records

下载 cDNA FASTA

XM_057951087.1
AACCCAATTAGCTTTGACAATAGCAACCTTGAGGATCCAAGCTAAATGTTAGCTTTAAAATGAAATGAAATAGGAAAAAAAATAAATAAAGGAGAAAAGACACCCAAACTTCTCTCAACACGGTTTCTCCTTCTTCACCCTACTTCTTTTCCGTCAATAAGCAAATTGAATCAAGGGCATTTATATAAGATGGCGTCTTCAAAATTTCCACGACAGCCAGAGAAATCTCAGGCAACACTTGGTAACACAGCAGCTAAAGC...

XM_057951086.1
TGAGGATCCAAGCTAAATGTTAGCTTTAAAATGAAATGAAATAGGAAAAAAAATAAATAAAGGAGAAAAGACACCCAAACTTCTCTCAACACGGTTTCTCCTTCTTCACCCTACTTCTTTTCCGTCAATAAGCAAATTGAATCAAGGGCATTTATATAAGGTGGTCAATCTGCGCATCATCTCATTTGATTTTCTTTAATCTAAATTTCCCATAAAACCTCCGATCATTTTCTTTGTTGTATCTGTACTAAAAAACCCTT...

CDS

3 records

下载 CDS FASTA

LOC131021795
ATGGCGTCTTCAAAATTTCCACGACAGCCAGAGAAATCTCAGGCAACACTTGGTAACACAGCAGCTAAAGCAGGAAATCCTAAAGCAACTTTTTCTAGATCTATGCCCTCAAGCATGTCAAATTTGGCGAGTACAAAGTCTGCTGCAGCTTCAGCTAAGTTCTCGGAAAATACTGAACATCTTCAAGAAATAAATAGTATAAGGAAAGCTCCTGTAGGGGCTCAGATAAAACGTGTTATCAACTTGCTCTTTAAGACAAG...

Protein

3 records

下载 Protein FASTA

XP_057807069.1
MASSKFPRQPEKSQATLGNTAAKAGNPKATFSRSMPSSMSNLASTKSAAASAKFSENTEHLQEINSIRKAPVGAQIKRVINLLFKTREALTPDQINKACYVDANGNKAVFDSLRNNPKVRYDGERFSYKSKHQLQNKTDLLQLIRTRPEGIAVIDLKDSYTAVLDDLQTLKGSGEIWLLSNFDSQEDIAYPNDPRASITVDDDLKQLFRGIELPRDMLDIERDLQKNGMKPATNTAKRRAAAEIHGMPQKPKTKKKKHEI...

XP_057807070.1
MASSKFPRQPEKSQATLGNTAAKAGNPKATFSRSMPSSMSNLASTKSAAASAKFSENTEHLQEINSIRKAPVGAQIKRVINLLFKTREALTPDQINKACYVDANGNKAVFDSLRNNPKVRYDGERFSYKSKHQLQNKTDLLQLIRTRPEGIAVIDLKDSYTAVLDDLQTLKGSGEIWLLSNFDSQEDIAYPNDPRASITVDDDLKQLFRGIELPRDMLDIERDLQKNGMKPATNTAKRRAAAEIHGMPQKPKTKKKKHEI...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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