Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr04G002712`

染色体: Chr04 坐标: 42724099-42726921 链方向: + 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr04G002712`
名称	SmilChr04G002712
描述	uncharacterized SmilChr04G002712
染色体 / SeqID	Chr04 / NC_080390.1
坐标与链方向	42724099 - 42726921 / `+`

ID 对照

NCBI Gene ID	`LOC131021817`
GeneID	`131021817`
locus_tag	`-`
NCBI Name	`LOC131021817`
原始查询	`SmilChr04G002712`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	Major facilitator superfamily protein [Source:NCBI gene (formerly Entrezgene);Acc:830883]; symbol=AT5G10190; hit=AT5G10190; species=arabidopsis; confidence=high
产物	Major facilitator superfamily protein [Source:NCBI gene (formerly Entrezgene);Acc:830883]; symbol=AT5G10190; hit=AT5G10190; species=arabidopsis; confidence=high
Arabidopsis	`AT5G10190` (AT5G10190) Major facilitator superfamily protein [Source:NCBI gene (formerly Entrezgene);Acc:830883] identity=73.5; qcov=0.889; evalue=0; confidence=high
Rice	`Os08g0409900` - identity=65; qcov=0.964; evalue=0; confidence=high
GO	GO:0016020 (membrane); GO:0022857 (transmembrane transporter activity); GO:0055085 (transmembrane transport)
KEGG	-
Pfam	PF00083 (Sugar_tr); PF07690 (MFS_1)
InterPro	-
eggNOG	-
NR	GeneID:131021817

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Vacuole	液泡	1.00000	`XP_057807089.1`
2	Vacuole membrane	液泡膜	1.00000	`XP_057807089.1`
3	Nucleus	细胞核	0.00000	`XP_057807089.1`
4	Chromosome	染色体	0.00000	`XP_057807089.1`
5	Centromere	着丝粒	0.00000	`XP_057807089.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr4:42724379`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	C58
`Chr4:42724434`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	C77
`Chr4:42724439`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	B28,B40
`Chr4:42724478`	`CG`	`C`	1bp_deletion	frameshift_variant	1	C35
`Chr4:42724478`	`CG`	`C`	1bp_deletion	CDS_variant	1	C35
`Chr4:42724608`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	B108,B27
`Chr4:42724643`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	B108,B27
`Chr4:42724652`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	B108,B27
`Chr4:42724664`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	B1,B46
`Chr4:42725451`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B126
`Chr4:42725774`	`C`	`T`	EMS_canonical_SNV	CDS_variant	4	B122,B34,C11,C69
`Chr4:42725834`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	D11

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057807089.1

522 aa

261

522

MFS_1

Sugar_tr

PF07690 MFS_1 19-384 aa PF00083 Sugar_tr 67-206 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057807089.1`	Pfam	`PF07690`	MFS_1	Family	19	384	9.8e-42	143.8	Major Facilitator Superfamily
`XP_057807089.1`	Pfam	`PF00083`	Sugar_tr	Family	67	206	6.4e-10	39.2	Sugar (and other) transporter

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

1 records

下载 cDNA FASTA

XM_057951106.1
GTTTTTATGTTATTTTTACCCTTCTTCCTGATTCCCTCTATTTTTGTGTACACCTATATTTATGGAAAATATCACAATAGCCTCGTACATTGTACAGTTACCCTTTCGGACAATATTCCTGTAATTACGCGACAGTTGTGAATCAGCCATTGCTTCTTTGCTTACAGTCGAAGCACAAAAAAGGAAACTCGAGAGCCCCACATAAATTCTTTCAATTCAGACACTCTCTCAGTCTGTCCTAGTCAACGGCGGCGATCAAT...

CDS

1 records

下载 CDS FASTA

LOC131021817
ATGAGGAAGATCACGGAGATGAGATCGGAGACGTTGACTCTTATCCTGGTGAATTTGGCCGGAATAATGGAACGCGCCGATGAATCTCTGCTGCCGGGAGTGTACAAGGAAGTCGGGGCGGCGCTGCATGCCGACCCAACTCGCCTCGGCTCTCTCACGCTTTTCAGATCCATCGTGCAGTCCTCGTGCTACCCCCTCGCCGCCTACCTCGCCGTCCGCCACAACCGGACCTCCGTCATCGCCCTCGGCGCTTTCCTCTG...

Protein

1 records

下载 Protein FASTA

XP_057807089.1
MRKITEMRSETLTLILVNLAGIMERADESLLPGVYKEVGAALHADPTRLGSLTLFRSIVQSSCYPLAAYLAVRHNRTSVIALGAFLWAAATFLVAISSTFAEVAISRGLNGIGLAIVTPAIQSLVADSTDDTNRGTAFGWLQLTGNLGSIIGGLLSVLIASTSVMGIPGWRIAFHLVAILSVVIGALVHLFANDPRFIDSDGKKKEQPPHKPFKEEVRELVKEAKAVIKVPSFQILVAQGVSGSFPWSSLSFAPMWLELM...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

下载 upstream 下载 downstream 下载 upstream + gene + downstream

JBrowse

跳转到基因组浏览器