Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID,以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因,再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。
示例

当前解析结果

SmilChr04G002713

染色体: Chr04 坐标: 42743316-42745112 链方向: + 类型: protein_coding

基本信息

统一新 Gene IDSmilChr04G002713
名称SmilChr04G002713
描述uncharacterized SmilChr04G002713
染色体 / SeqIDChr04 / NC_080390.1
坐标与链方向42743316 - 42745112 / +

ID 对照

NCBI Gene IDLOC131021818
GeneID131021818
locus_tag-
NCBI NameLOC131021818
原始查询SmilChr04G002713

查看完整 ID 对照表

功能注释

来源GFF basic annotation; Arabidopsis/Rice homolog
描述cell wall integrity/stress response component-like protein [Source:NCBI gene (formerly Entrezgene);Acc:830143]; symbol=AT4G39840; hit=AT4G39840; species=arabidopsis; confidence=high
产物cell wall integrity/stress response component-like protein [Source:NCBI gene (formerly Entrezgene);Acc:830143]; symbol=AT4G39840; hit=AT4G39840; species=arabidopsis; confidence=high
ArabidopsisAT4G39840 (AT4G39840)
cell wall integrity/stress response component-like protein [Source:NCBI gene (formerly Entrezgene);Acc:830143]
identity=56.5; qcov=0.911; evalue=1.37e-120; confidence=high
RiceOs08g0411300
-
identity=32.5; qcov=0.916; evalue=1.28e-56; confidence=low
GO-
KEGG-
Pfam-
InterPro-
eggNOG-
NRGeneID:131021818

打开注释模块

亚细胞定位 Top 5

Rank定位位置中文ScoreProtein ID
1 Endoplasmic reticulum 内质网 1.00000 XP_057807090.1
2 Endoplasmic reticulum membrane 内质网膜 1.00000 XP_057807090.1
3 Nucleus membrane 核膜 0.40000 XP_057807090.1
4 Golgi apparatus 高尔基体 0.20000 XP_057807090.1
5 Nucleus 细胞核 0.00000 XP_057807090.1

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变;完整结果可进入 EMS 突变库继续筛选或下载。

位置 REF ALT 类型 影响 携带材料数 材料
Chr4:42743834 C T EMS_canonical_SNV CDS_variant 5 A1,B139,C18,C22,C27
Chr4:42744041 C T EMS_canonical_SNV CDS_variant 1 B104
Chr4:42744058 C T EMS_canonical_SNV CDS_variant 1 C23
Chr4:42744096 C T EMS_canonical_SNV CDS_variant 2 B75,B99
Chr4:42744378 C T EMS_canonical_SNV CDS_variant 4 B35,B75,B99,C42
Chr4:42744528 G A EMS_canonical_SNV CDS_variant 2 A4,C58
Chr4:42744591 C T EMS_canonical_SNV CDS_variant 4 B108,B27,B75,B99
Chr4:42744609 G A EMS_canonical_SNV CDS_variant 1 D11
Chr4:42744693 C T EMS_canonical_SNV CDS_variant 1 B126
Chr4:42744756 C T EMS_canonical_SNV CDS_variant 1 C64

进入 EMS 突变库

预测功能结构域

当前发布数据中,此基因没有可展示的 Pfam 结构域命中。

进入结构域查询

cDNA / CDS / Protein 序列

下载基因组 DNA(仅基因区域)

每个公开基因均提供参考注释对应的转录本序列;蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

1 records

下载 cDNA FASTA
XM_057951107.1
GATGTAATATTTCATTCCGTTAGCGACAAACGCATAGTCGTTCGGTAAAAACACAGCAAGTCTTCCAAGAAAAATATAAGCTCTCTAATAGTATTAGTTTTCATTGATCGAAGAATTAGAATTTGATCTTCATTGCTTACGCACCATAATAAGTGGGATATAAATAATGGTGTAAAACCGCGTTACTACACTATGCCCAAAGTGCAGTGGCGCCATGTGACTGATCCCCATTAAAGTCCCCTTCACCTTCACTCTCCATT...

CDS

1 records

下载 CDS FASTA
LOC131021818
ATGGCTCCACTCCAACACTCTGTTTCCAACAAGGTACTCTTGCTCTATCTAATCTTGCTCCTTTTCATCACTTCTTCACTCATTTCGGCCCAACCACGAAGATTCCTGTCTGAAGATGATCAAGATTTCCCGCTCATCAAGAAGAAATCCAATTCCACCACCAAAAACCAAACTAAACTCATCAAACCTACCACTACTTCAACTTCTTCTTCATCCAAGAACCAAACCAAACTCATTAAACCTACGTCACTCTCATCCAA...

Protein

1 records

下载 Protein FASTA
XP_057807090.1
MAPLQHSVSNKVLLLYLILLLFITSSLISAQPRRFLSEDDQDFPLIKKKSNSTTKNQTKLIKPTTTSTSSSSKNQTKLIKPTSLSSKVITKLPFDSTKNKTKLIKATSSSIKKLNSTSNSTLSTKKTSDPNKPASPKENTTQSKSLIEKSVLATKSNSKSLKKPSWIDQEDDDDDLVSDFRELPSKFQESIVPDLEKISQTSRIYLTKYNKEFTRGFKPYVGNKYASKIASLVSFTFIIIPLILVSLMFSRIKAYFSIQK...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补,使最终 FASTA 为转录方向 5′→3′。

下载 upstream 下载 downstream 下载 upstream + gene + downstream

JBrowse

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