Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr04G002725`

染色体: Chr04 坐标: 42853277-42859518 链方向: - 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr04G002725`
名称	SmilChr04G002725
描述	asparagine synthetase [glutamine-hydrolyzing] 3
染色体 / SeqID	Chr04 / NC_080390.1
坐标与链方向	42853277 - 42859518 / `-`

ID 对照

NCBI Gene ID	`LOC131021826`
GeneID	`131021826`
locus_tag	`-`
NCBI Name	`LOC131021826`
原始查询	`SmilChr04G002725`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; KEGG smil; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	asparagine synthetase [glutamine-hydrolyzing] 3
产物	asparagine synthetase [glutamine-hydrolyzing] 3
Arabidopsis	`AT5G10240` (ASN3) asparagine synthetase 3 [Source:NCBI gene (formerly Entrezgene);Acc:830888] identity=86.2; qcov=0.993; evalue=0; confidence=high
Rice	`Os06g0265000` (ASN) - identity=85.1; qcov=0.989; evalue=0; confidence=high
GO	GO:0004066 (asparagine synthase (glutamine-hydrolyzing) activity); GO:0005829 (cytosol); GO:0006529 (GO:0006529)
KEGG	smil00250 (Alanine, aspartate and glutamate metabolism - Salvia miltiorrhiza (redroot sage)); smil01100 (Metabolic pathways - Salvia miltiorrhiza (redroot sage)); smil01110 (Biosynthesis of secondary metabolites - Salvia miltiorrhiza (redroot sage)); smil01230 (Biosynthesis of amino acids - Salvia miltiorrhiza (redroot sage))
Pfam	PF00733 (Asn_synthase); PF12481 (DUF3700); PF13522 (GATase_6); PF13537 (GATase_7)
InterPro	-
eggNOG	-
NR	GeneID:131021826

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Cytoplasm	细胞质	1.00000	`XP_057807098.1`
2	Cytosol	细胞质基质	0.40000	`XP_057807098.1`
3	Nucleus	细胞核	0.00000	`XP_057807098.1`
4	Chromosome	染色体	0.00000	`XP_057807098.1`
5	Centromere	着丝粒	0.00000	`XP_057807098.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr4:42853537`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	B100,B33
`Chr4:42855453`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B34
`Chr4:42856931`	`G`	`A`	EMS_canonical_SNV	CDS_variant	3	B122,C11,C69
`Chr4:42857093`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B73
`Chr4:42859150`	`C`	`T`	EMS_canonical_SNV	CDS_variant	3	B81,C41,C6

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057807098.1

562 aa

281

562

GATase_6

GATase_7

DUF3700

Asn_synthase

PF13522 GATase_6 1-168 aa PF13537 GATase_7 48-165 aa PF12481 DUF3700 112-186 aa PF00733 Asn_synthase 210-360 aa PF00733 Asn_synthase 358-510 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057807098.1`	Pfam	`PF13522`	GATase_6	Domain	1	168	3.5e-56	190.7	Glutamine amidotransferase domain
`XP_057807098.1`	Pfam	`PF13537`	GATase_7	Domain	48	165	3.4e-43	147.3	Glutamine amidotransferase domain
`XP_057807098.1`	Pfam	`PF12481`	DUF3700	Domain	112	186	2.1e-09	37.9	Aluminium induced protein
`XP_057807098.1`	Pfam	`PF00733`	Asn_synthase	Domain	210	360	1.2e-88	298.9	Asparagine synthase
`XP_057807098.1`	Pfam	`PF00733`	Asn_synthase	Domain	358	510	1.2e-88	298.9	Asparagine synthase

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

1 records

下载 cDNA FASTA

XM_057951115.1
GAATATTCAATATTTCGAAAAAGGGGAATCCTGGGCCCGACATAAATTGAATCTTCAGAAATCAAACAGTGATTAAACCCTAATTAAGTGAAGGAATCTTTAGTAAACCGTTCAAGATATACGGTCCAGATCATCCCATACACTGCATAAAACTTACACTCCGTCTCTGCTCGTCAGCCTCCATTTCTAACGGCTGCCTCGCGCTTCTCTCTATCTTTCAGCCTCCTTTCCACAGAGGAACACACGCACGCACTCGCATA...

CDS

1 records

下载 CDS FASTA

LOC131021826
ATGTGTGGAATTCTCGCTGTGCTTGGCGTTGCTGACAACTCTCAGGCGAAACGCTCGAGGATTATTGAACTCTCGAGAAGGTTGCGACACAGAGGCCCTGATTGGAGTGGGTTGCACCATCATAAGGATTGTTATCTTGCTCATCAACGTTTAGCTATTGTGGATCCTGCCTCTGGGGATCAACCTCTATACAATGAAGACAAAACAGTTGTCGTGGCGGTTAATGGAGAAATATACAACCATAAAGAACTAAGGGAGAA...

Protein

1 records

下载 Protein FASTA

XP_057807098.1
MCGILAVLGVADNSQAKRSRIIELSRRLRHRGPDWSGLHHHKDCYLAHQRLAIVDPASGDQPLYNEDKTVVVAVNGEIYNHKELREKLKSHSFRTGSDCEVIAHLYEDYGEEFVNMLDGMFSFVLLDTRDDSFIAARDAIGITPLYIGWGLDGSTWFASEMKALSDDCERFMTFPPGHIYSSKTGEHKRWYNPPWYPETIPSGPYDALVLRKAFEKAVIKRLMTDVPFGVLLSGGLDSSLVASVASRYLADSTAAQWGSQ...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

下载 upstream 下载 downstream 下载 upstream + gene + downstream

JBrowse

跳转到基因组浏览器