Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr04G002735`

染色体: Chr04 坐标: 43009539-43011322 链方向: - 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr04G002735`
名称	SmilChr04G002735
描述	60S ribosomal protein L7-1-like
染色体 / SeqID	Chr04 / NC_080390.1
坐标与链方向	43009539 - 43011322 / `-`

ID 对照

NCBI Gene ID	`LOC131021835`
GeneID	`131021835`
locus_tag	`-`
NCBI Name	`LOC131021835`
原始查询	`SmilChr04G002735`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; KEGG smil; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	60S ribosomal protein L7-1-like
产物	60S ribosomal protein L7-1-like
Arabidopsis	`AT1G80750` (AT1G80750) Ribosomal protein L30/L7 family protein [Source:NCBI gene (formerly Entrezgene);Acc:844414] identity=51.9; qcov=0.996; evalue=1.18e-81; confidence=high
Rice	`Os08g0542100` - identity=51.4; qcov=1.01; evalue=2e-80; confidence=high
GO	GO:0000463 (maturation of LSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)); GO:0003723 (RNA binding); GO:0003735 (structural constituent of ribosome); GO:0022625 (cytosolic large ribosomal subunit)
KEGG	smil03010 (Ribosome - Salvia miltiorrhiza (redroot sage))
Pfam	PF00327 (Ribosomal_L30); PF08079 (Ribosomal_L30_N)
InterPro	-
eggNOG	-
NR	GeneID:131021835

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Cytoplasm	细胞质	0.60000	`XP_057807111.1`
2	Nucleus	细胞核	0.40000	`XP_057807113.1`
3	Nucleolus	核仁	0.40000	`XP_057807113.1`
4	Mitochondrion	线粒体	0.20000	`XP_057807111.1`
5	Chromosome	染色体	0.00000	`XP_057807113.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr4:43009919`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	B108,B27
`Chr4:43009928`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B28
`Chr4:43009935`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	B108,B27
`Chr4:43009954`	`CG`	`C`	1bp_deletion	frameshift_variant	32	A20,A5,A8,B1,B120,B13,B139,B14,B15,B17,B19,B29,B40,B44,B48,B52,B57,B60,B64,B74,B87,B90,B92,B97,C1,C28,C31,C36,C37,C49,D11,D5
`Chr4:43009958`	`C`	`T`	EMS_canonical_SNV	CDS_variant	5	B127,B21,B37,B88,C62
`Chr4:43009988`	`C`	`T`	EMS_canonical_SNV	CDS_variant	3	A22,B121,C49
`Chr4:43009989`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B47
`Chr4:43010029`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B33
`Chr4:43010170`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B28
`Chr4:43010173`	`G`	`A`	EMS_canonical_SNV	stop_gained	4	B102,B118,B126,D6
`Chr4:43010173`	`G`	`A`	EMS_canonical_SNV	CDS_variant	4	B102,B118,B126,D6
`Chr4:43010179`	`G`	`A`	EMS_canonical_SNV	stop_gained	25	A13,A2,A25,B102,B11,B125,B127,B129,B138,B20,B30,B31,B47,B56,B72,B8,B86,B96,C26,C38,C47,C56,C75,D10,D2

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057807111.1

268 aa

134

268

Ribosomal_L30_N

Ribosomal_L30

PF08079 Ribosomal_L30_N 11-69 aa PF00327 Ribosomal_L30 86-136 aa

XP_057807113.1

244 aa

122

244

Ribosomal_L30_N

Ribosomal_L30

PF08079 Ribosomal_L30_N 11-69 aa PF00327 Ribosomal_L30 86-136 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057807111.1`	Pfam	`PF08079`	Ribosomal_L30_N	Domain	11	69	1.2e-08	35.9	Ribosomal L30 N-terminal domain
`XP_057807111.1`	Pfam	`PF00327`	Ribosomal_L30	Domain	86	136	4.4e-16	59.2	Ribosomal protein L30p/L7e
`XP_057807113.1`	Pfam	`PF08079`	Ribosomal_L30_N	Domain	11	69	1.2e-08	35.8	Ribosomal L30 N-terminal domain
`XP_057807113.1`	Pfam	`PF00327`	Ribosomal_L30	Domain	86	136	3.8e-16	59.4	Ribosomal protein L30p/L7e

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

2 records

下载 cDNA FASTA

XM_057951130.1
AATGAATTTCACACACATGGGCGCACAACTTACAAACAGTTTCTCTTCTCAGTGATTTTTATCTTCTTCATCAATTGTTGAAACCTTAGCTTCCCCTTCCCTTCATTGATCTGGCCGTCACATGGCGGCGGAGGCGGCGGCTCTGAATTTCATACCGGAGGTGGTCCTGAAGAAGAGGAAGACTAATGAACAGTGGGCAATTAGAAGAAAACTCCAGCAGCAGGAGAGGGCTAAGCGTCTCAAAACCGGAACTTTTATCA...

XM_057951128.1
CTCAGTGATTTTTATCTTCTTCATCAATTGTTGAAACCTTAGCTTCCCCTTCCCTTCATTGATCTGGCCGTCACATGGCGGCGGAGGCGGCGGCTCTGAATTTCATACCGGAGGTGGTCCTGAAGAAGAGGAAGACTAATGAACAGTGGGCAATTAGAAGAAAACTCCAGCAGCAGGAGAGGGCTAAGCGTCTCAAAACCGGAACTTTTATCATAAAAAAGCCCGAGCAGTTCATCCGAGAAAATCGCGATAAGGAATTG...

CDS

2 records

下载 CDS FASTA

LOC131021835
ATGGCGGCGGAGGCGGCGGCTCTGAATTTCATACCGGAGGTGGTCCTGAAGAAGAGGAAGACTAATGAACAGTGGGCAATTAGAAGAAAACTCCAGCAGCAGGAGAGGGCTAAGCGTCTCAAAACCGGAACTTTTATCATAAAAAAGCCCGAGCAGTTCATCCGAGAAAATCGCGATAAGGAATTGGACCTAGTTCAAATGAAGAGTAGGGGCAAGCTAATTAGAGCAGCATCATTCACACTGGAATCCAATCTTCTATT...

Protein

2 records

下载 Protein FASTA

XP_057807111.1
MAAEAAALNFIPEVVLKKRKTNEQWAIRRKLQQQERAKRLKTGTFIIKKPEQFIRENRDKELDLVQMKSRGKLIRAASFTLESNLLFVIRIQGKNDMHPKTRKILYSLRLRKIRTGVFVKASAGMMEMLQKVEPYVTYGYPDVKSVKDLIYKKGVVRVGKERIPLIDNNIVEQVRASSDSIFVIFQICPNMIICLLQELGKHNIICIEDIVNEVVSVGSHFKAVNSFLCPFVLNNPEKALQGKKKRFEDGGDSGNRKVQI...

XP_057807113.1
MAAEAAALNFIPEVVLKKRKTNEQWAIRRKLQQQERAKRLKTGTFIIKKPEQFIRENRDKELDLVQMKSRGKLIRAASFTLESNLLFVIRIQGKNDMHPKTRKILYSLRLRKIRTGVFVKASAGMMEMLQKVEPYVTYGYPDVKSVKDLIYKKGVVRVGKERIPLIDNNIVEQELGKHNIICIEDIVNEVVSVGSHFKAVNSFLCPFVLNNPEKALQGKKKRFEDGGDSGNRKVQINELISKMN

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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