当前解析结果
SmilChr04G002742| 统一新 Gene ID | SmilChr04G002742 |
|---|---|
| 名称 | SmilChr04G002742 |
| 描述 | F-box protein FBW2-like |
| 染色体 / SeqID | Chr04 / NC_080390.1 |
| 坐标与链方向 | 43082762 - 43085372 / + |
| NCBI Gene ID | LOC131021840 |
|---|---|
| GeneID | 131021840 |
| locus_tag | - |
| NCBI Name | LOC131021840 |
| 原始查询 | SmilChr04G002742 |
| 来源 | GFF basic annotation; Arabidopsis/Rice homolog |
|---|---|
| 描述 | F-box protein FBW2-like |
| 产物 | F-box protein FBW2-like |
| Arabidopsis | AT4G08980 (FBW2)F-BOX WITH WD-40 2 [Source:NCBI gene (formerly Entrezgene);Acc:826476] identity=52.7; qcov=1.03; evalue=9.1e-106; confidence=high |
| Rice | Os06g0219700 (OsFbox304)- identity=52.6; qcov=1.01; evalue=4.57e-111; confidence=high |
| GO | - |
| KEGG | - |
| Pfam | - |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:131021840 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Nucleus | 细胞核 | 1.00000 | XP_057807141.1 |
| 2 | Cytoplasm | 细胞质 | 0.40000 | XP_057807141.1 |
| 3 | Cytosol | 细胞质基质 | 0.40000 | XP_057807141.1 |
| 4 | Chromosome | 染色体 | 0.00000 | XP_057807141.1 |
| 5 | Centromere | 着丝粒 | 0.00000 | XP_057807141.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变;完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr4:43083906 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | C6 |
Chr4:43083916 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | C85 |
Chr4:43083931 |
C |
T |
EMS_canonical_SNV | CDS_variant | 5 | B104,B23,B24,B48,D11 |
Chr4:43083933 |
G |
GAT |
2bp_insertion | frameshift_variant | 219 | A1,A10,A13,A14,A15,A16,A2,A20,A22,A23,A24,A25,A3,A4,A5,A6,A7,A8,A9,B1,B10,B100,B101,B102,B103,B104,B105,B106,B107,B108,B109,B11,B110,B111,B114,B115,B117,B118,B119,B121,B122,B123,B124,B125,B126,B127,B129,B13,B131,B132,B134,B135,B136,B138,B14,B140,B15,B16,B17,B18,B19,B2,B21,B23,B25,B26,B28,B3,B30,B31,B32,B33,B34,B36,B37,B38,B39,B4,B40,B41,B42,B43,B44,B46,B47,B48,B49,B5,B50,B51,B52,B54,B55,B56,B57,B59,B6,B60,B62,B64,B65,B66,B67,B68,B69,B7,B70,B71,B72,B73,B74,B75,B76,B78,B79,B8,B80,B81,B83,B85,B87,B88,B89,B9,B90,B91,B92,B93,B95,B96,B97,B98,B99,C1,C10,C11,C12,C16,C17,C18,C19,C2,C21,C22,C23,C24,C25,C26,C28,C29,C3,C30,C31,C32,C33,C34,C35,C36,C37,C38,C39,C4,C40,C41,C42,C43,C44,C45,C46,C47,C49,C5,C50,C51,C52,C53,C54,C55,C57,C58,C59,C6,C60,C61,C62,C63,C64,C65,C66,C67,C68,C69,C70,C71,C72,C73,C74,C75,C76,C78,C8,C80,C82,C83,C84,C85,C86,C87,C9,D1,D10,D11,D2,D3,D5,D6,D7,D8,D9 |
Chr4:43083940 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | C58 |
Chr4:43084015 |
TG |
T |
1bp_deletion | frameshift_variant | 110 | A1,A10,A13,A14,A18,A19,A20,A23,A3,A6,A9,B1,B101,B104,B105,B109,B110,B111,B113,B117,B119,B122,B123,B125,B128,B13,B131,B134,B135,B137,B18,B2,B22,B26,B27,B31,B36,B38,B39,B40,B41,B42,B43,B44,B46,B48,B50,B53,B57,B6,B62,B64,B65,B68,B7,B71,B78,B8,B81,B82,B83,B85,B88,B89,B93,B94,B99,C11,C15,C17,C18,C19,C23,C24,C25,C27,C29,C30,C33,C37,C40,C41,C42,C44,C49,C50,C52,C53,C57,C6,C60,C62,C63,C64,C66,C67,C68,C69,C7,C71,C72,C74,C82,C84,C86,C87,D10,D3,D6,D7 |
Chr4:43084019 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B33 |
Chr4:43084029 |
G |
GCA |
2bp_insertion | frameshift_variant | 39 | A24,A5,A6,B104,B114,B122,B131,B135,B136,B15,B2,B24,B28,B29,B47,B48,B61,B74,B80,B89,C10,C23,C28,C30,C33,C35,C4,C41,C42,C60,C62,C64,C78,C8,C80,C84,C86,D10,D11 |
Chr4:43084032 |
TG |
T |
1bp_deletion | frameshift_variant | 220 | A1,A10,A13,A14,A15,A16,A18,A19,A2,A20,A21,A22,A23,A25,A3,A4,A6,A7,A8,A9,B1,B10,B100,B101,B102,B103,B104,B105,B106,B107,B109,B11,B110,B111,B113,B114,B115,B117,B118,B119,B12,B121,B123,B124,B125,B126,B127,B128,B129,B13,B130,B131,B133,B134,B135,B136,B137,B138,B139,B14,B140,B17,B18,B19,B2,B21,B22,B23,B25,B26,B27,B29,B30,B31,B32,B33,B34,B35,B36,B38,B39,B4,B40,B41,B42,B43,B44,B46,B48,B49,B50,B51,B52,B53,B54,B57,B58,B59,B6,B60,B62,B63,B64,B65,B66,B67,B68,B69,B7,B70,B71,B72,B73,B74,B75,B76,B77,B78,B79,B8,B81,B82,B83,B84,B85,B87,B88,B89,B9,B90,B91,B92,B93,B94,B95,B97,B98,B99,C10,C11,C12,C13,C15,C17,C18,C19,C2,C20,C21,C22,C24,C25,C26,C27,C28,C29,C3,C30,C31,C32,C33,C34,C35,C36,C37,C38,C39,C40,C42,C43,C44,C45,C46,C47,C48,C49,C5,C50,C51,C52,C53,C54,C55,C56,C57,C6,C61,C63,C64,C65,C66,C67,C68,C69,C7,C70,C71,C72,C73,C74,C75,C76,C77,C78,C81,C82,C83,C84,C85,C86,C87,C9,D1,D10,D2,D3,D6,D7,D8,D9 |
Chr4:43084043 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B5 |
Chr4:43084073 |
G |
A |
EMS_canonical_SNV | CDS_variant | 4 | B29,B73,B97,C77 |
Chr4:43084076 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | A18 |
每个公开基因均提供参考注释对应的转录本序列;蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
3 records
下载 cDNA FASTA3 records
下载 CDS FASTA3 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补,使最终 FASTA 为转录方向 5′→3′。