当前解析结果
SmilChr04G002747| 统一新 Gene ID | SmilChr04G002747 |
|---|---|
| 名称 | SmilChr04G002747 |
| 描述 | peroxidase 17-like |
| 染色体 / SeqID | Chr04 / NC_080390.1 |
| 坐标与链方向 | 43147366 - 43148855 / + |
| NCBI Gene ID | LOC131021844 |
|---|---|
| GeneID | 131021844 |
| locus_tag | - |
| NCBI Name | LOC131021844 |
| 原始查询 | SmilChr04G002747 |
| 来源 | GFF basic annotation; NCBI GO GAF; KEGG smil; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | peroxidase 17-like |
| 产物 | peroxidase 17-like |
| Arabidopsis | AT2G22420 (AT2G22420)Peroxidase superfamily protein [Source:NCBI gene (formerly Entrezgene);Acc:816773] identity=69.7; qcov=0.966; evalue=2.89e-165; confidence=high |
| Rice | Os09g0471100 (prx122)- identity=68.7; qcov=0.935; evalue=1.15e-154; confidence=high |
| GO | GO:0004601 (peroxidase activity); GO:0006979 (response to oxidative stress); GO:0020037 (heme binding); GO:0042744 (hydrogen peroxide catabolic process) |
| KEGG | smil00940 (Phenylpropanoid biosynthesis - Salvia miltiorrhiza (redroot sage)); smil01100 (Metabolic pathways - Salvia miltiorrhiza (redroot sage)); smil01110 (Biosynthesis of secondary metabolites - Salvia miltiorrhiza (redroot sage)) |
| Pfam | PF00141 (peroxidase) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:131021844 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Vacuole | 液泡 | 0.80000 | XP_057807147.1 |
| 2 | Secreted | 分泌到胞外 | 0.60000 | XP_057807147.1 |
| 3 | Cell wall | 细胞壁 | 0.20000 | XP_057807147.1 |
| 4 | Nucleus | 细胞核 | 0.00000 | XP_057807147.1 |
| 5 | Chromosome | 染色体 | 0.00000 | XP_057807147.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变;完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr4:43147449 |
G |
GCT |
2bp_insertion | frameshift_variant | 3 | B114,B90,B92 |
Chr4:43147449 |
G |
GCT |
2bp_insertion | CDS_variant | 3 | B114,B90,B92 |
Chr4:43147470 |
G |
A |
EMS_canonical_SNV | CDS_variant | 5 | A21,B125,B90,B92,C87 |
Chr4:43147472 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | B52,C48 |
Chr4:43147490 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | C58 |
Chr4:43147611 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | C25 |
Chr4:43148340 |
G |
A |
EMS_canonical_SNV | CDS_variant | 3 | A7,B35,B55 |
Chr4:43148342 |
C |
T |
EMS_canonical_SNV | CDS_variant | 4 | B134,B77,B91,C21 |
Chr4:43148390 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | B38,B39 |
Chr4:43148455 |
TG |
T |
1bp_deletion | frameshift_variant | 1 | B14 |
Chr4:43148455 |
TG |
T |
1bp_deletion | CDS_variant | 1 | B14 |
Chr4:43148607 |
C |
T |
EMS_canonical_SNV | stop_gained | 13 | A23,B12,B121,B124,B129,B69,B81,B89,B94,C26,C28,C77,C9 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan;位置为对应蛋白序列上的氨基酸坐标。
XP_057807147.1PF00141
peroxidase 41-286 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057807147.1 |
Pfam | PF00141 |
peroxidase | Domain | 41 | 286 | 1.7e-75 | 254.6 | Peroxidase |
每个公开基因均提供参考注释对应的转录本序列;蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补,使最终 FASTA 为转录方向 5′→3′。