当前解析结果
SmilChr04G002754| 统一新 Gene ID | SmilChr04G002754 |
|---|---|
| 名称 | SmilChr04G002754 |
| 描述 | kinesin-like protein KIN-14B |
| 染色体 / SeqID | Chr04 / NC_080390.1 |
| 坐标与链方向 | 43239631 - 43254720 / - |
| NCBI Gene ID | LOC131021851 |
|---|---|
| GeneID | 131021851 |
| locus_tag | - |
| NCBI Name | LOC131021851 |
| 原始查询 | SmilChr04G002754 |
| 来源 | GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | kinesin-like protein KIN-14B |
| 产物 | kinesin-like protein KIN-14B |
| Arabidopsis | AT5G10470 (KAC1)kinesin like protein for actin based chloroplast movement 1 [Source:NCBI gene (formerly Entrezgene);Acc:830911] identity=70.3; qcov=0.996; evalue=0; confidence=high |
| Rice | Os06g0217600- identity=66.1; qcov=0.195; evalue=2.5e-108; confidence=weak |
| GO | GO:0003777 (microtubule motor activity); GO:0005524 (ATP binding); GO:0007018 (microtubule-based movement); GO:0008017 (microtubule binding) |
| KEGG | - |
| Pfam | PF00225 (Kinesin); PF16796 (Microtub_bd) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:131021851 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Cytoskeleton | 细胞骨架 | 1.00000 | XP_057807154.1 |
| 2 | Spindle | Spindle | 0.60000 | XP_057807154.1 |
| 3 | Spindle pole | Spindle pole | 0.60000 | XP_057807154.1 |
| 4 | Spindle pole body | Spindle pole body | 0.40000 | XP_057807154.1 |
| 5 | Chromosome | 染色体 | 0.20000 | XP_057807154.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变;完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr4:43240042 |
G |
A |
EMS_canonical_SNV | CDS_variant | 4 | B16,C40,C44,C52 |
Chr4:43240161 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | C14 |
Chr4:43240373 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B11 |
Chr4:43241137 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B31 |
Chr4:43241331 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B40 |
Chr4:43241490 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | C40 |
Chr4:43242664 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | C38,C50 |
Chr4:43244092 |
C |
T |
EMS_canonical_SNV | CDS_variant | 5 | B25,B33,C14,C18,C2 |
Chr4:43244466 |
C |
T |
EMS_canonical_SNV | CDS_variant | 3 | A3,B113,B68 |
Chr4:43244889 |
G |
A |
EMS_canonical_SNV | CDS_variant | 4 | B13,B27,C25,C43 |
Chr4:43244907 |
G |
A |
EMS_canonical_SNV | CDS_variant | 3 | A5,B29,C17 |
Chr4:43246050 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B88 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan;位置为对应蛋白序列上的氨基酸坐标。
XP_057807154.1PF16796
Microtub_bd 121-275 aa
PF00225
Kinesin 141-447 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057807154.1 |
Pfam | PF16796 |
Microtub_bd | Domain | 121 | 275 | 4.4e-35 | 121.6 | Microtubule binding |
XP_057807154.1 |
Pfam | PF00225 |
Kinesin | Domain | 141 | 447 | 5.7e-81 | 272.8 | Kinesin motor domain |
每个公开基因均提供参考注释对应的转录本序列;蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补,使最终 FASTA 为转录方向 5′→3′。