Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr04G002760`

染色体: Chr04 坐标: 43338436-43346127 链方向: - 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr04G002760`
名称	SmilChr04G002760
描述	mechanosensitive ion channel protein 2, chloroplastic-like
染色体 / SeqID	Chr04 / NC_080390.1
坐标与链方向	43338436 - 43346127 / `-`

ID 对照

NCBI Gene ID	`LOC131021856`
GeneID	`131021856`
locus_tag	`-`
NCBI Name	`LOC131021856`
原始查询	`SmilChr04G002760`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	mechanosensitive ion channel protein 2, chloroplastic-like
产物	mechanosensitive ion channel protein 2%2C chloroplastic-like
Arabidopsis	`AT5G10490` (MSL2) MSCS-like 2 [Source:NCBI gene (formerly Entrezgene);Acc:830913] identity=55.1; qcov=1.01; evalue=0; confidence=high
Rice	`Os03g0432900` - identity=38.9; qcov=0.311; evalue=6.33e-26; confidence=low
GO	GO:0016020 (membrane); GO:0055085 (transmembrane transport)
KEGG	-
Pfam	PF00924 (MS_channel_2nd); PF24956 (Msl2-3_C); PF25237 (MSL2_3)
InterPro	-
eggNOG	-
NR	GeneID:131021856

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Chloroplast	叶绿体	1.00000	`XP_057807159.1`
2	Chloroplast membrane	叶绿体膜	1.00000	`XP_057807159.1`
3	Nucleus	细胞核	0.00000	`XP_057807159.1`
4	Chromosome	染色体	0.00000	`XP_057807159.1`
5	Centromere	着丝粒	0.00000	`XP_057807159.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr4:43338813`	`C`	`T`	EMS_canonical_SNV	CDS_variant	5	B114,B117,B122,C11,C69
`Chr4:43338931`	`G`	`A`	EMS_canonical_SNV	CDS_variant	3	B81,C6,C80
`Chr4:43338953`	`G`	`A`	EMS_canonical_SNV	CDS_variant	5	A21,A25,B125,B20,B30
`Chr4:43339019`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B79
`Chr4:43339058`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	B1,B66
`Chr4:43339113`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	B114,B117
`Chr4:43339154`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	D11
`Chr4:43345406`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	B10,B59
`Chr4:43345465`	`CGT`	`C`	2bp_deletion	frameshift_variant	59	A1,A14,A20,A4,A5,B100,B102,B103,B111,B119,B12,B120,B132,B134,B17,B20,B27,B29,B30,B34,B35,B41,B45,B48,B52,B55,B57,B65,B68,B77,B78,B79,B8,B83,B85,B86,B92,B94,B95,B99,C10,C27,C28,C31,C37,C47,C48,C49,C54,C55,C62,C71,C74,C76,C77,C78,C82,C84,D3
`Chr4:43345469`	`TC`	`T`	1bp_deletion	frameshift_variant	70	A10,A15,A21,A24,A6,A7,A9,B106,B108,B109,B110,B111,B112,B115,B122,B124,B125,B127,B128,B133,B136,B137,B17,B20,B22,B30,B32,B41,B42,B43,B46,B51,B57,B58,B6,B61,B66,B67,B69,B71,B8,B81,B82,B84,B89,B91,B98,C1,C16,C23,C24,C25,C32,C33,C34,C40,C45,C5,C54,C6,C66,C67,C68,C73,C86,D1,D2,D7,D8,D9
`Chr4:43345491`	`TC`	`T`	1bp_deletion	frameshift_variant	151	A1,A10,A11,A14,A15,A18,A20,A21,A24,A4,A5,A6,A7,A9,B100,B103,B106,B108,B109,B110,B111,B112,B115,B117,B118,B119,B12,B120,B122,B124,B125,B127,B128,B130,B132,B133,B134,B135,B136,B137,B140,B16,B17,B20,B22,B24,B26,B29,B3,B30,B32,B34,B35,B41,B42,B43,B45,B46,B48,B51,B52,B54,B55,B56,B57,B58,B6,B61,B65,B66,B67,B68,B69,B71,B73,B74,B77,B78,B79,B8,B81,B82,B83,B84,B85,B86,B88,B89,B90,B91,B92,B93,B94,B95,B96,B97,B98,B99,C1,C10,C12,C16,C23,C24,C25,C27,C3,C30,C31,C32,C33,C34,C37,C40,C45,C47,C48,C49,C5,C51,C53,C54,C55,C57,C6,C61,C62,C64,C66,C67,C68,C7,C71,C72,C73,C74,C76,C77,C78,C80,C81,C82,C84,C86,D1,D11,D2,D3,D7,D8,D9

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057807159.1

680 aa

340

680

MSL2_3

MS_channel_2nd

Msl2-3_C

PF25237 MSL2_3 157-284 aa PF00924 MS_channel_2nd 286-356 aa PF24956 Msl2-3_C 361-447 aa

XP_057807160.1

678 aa

339

678

MSL2_3

MS_channel_2nd

Msl2-3_C

PF25237 MSL2_3 155-282 aa PF00924 MS_channel_2nd 284-354 aa PF24956 Msl2-3_C 359-445 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057807159.1`	Pfam	`PF25237`	MSL2_3	Domain	157	284	5.6e-66	221.8	Mechanosensitive channel protein 2/3 domain
`XP_057807159.1`	Pfam	`PF00924`	MS_channel_2nd	Domain	286	356	1.2e-12	48.4	Mechanosensitive ion channel, beta-domain
`XP_057807159.1`	Pfam	`PF24956`	Msl2-3_C	Domain	361	447	4.8e-45	152.4	Mechanosensitive ion channel protein 2/3 C-terminal
`XP_057807160.1`	Pfam	`PF25237`	MSL2_3	Domain	155	282	5.6e-66	221.8	Mechanosensitive channel protein 2/3 domain
`XP_057807160.1`	Pfam	`PF00924`	MS_channel_2nd	Domain	284	354	1.2e-12	48.4	Mechanosensitive ion channel, beta-domain
`XP_057807160.1`	Pfam	`PF24956`	Msl2-3_C	Domain	359	445	4.7e-45	152.4	Mechanosensitive ion channel protein 2/3 C-terminal

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

2 records

下载 cDNA FASTA

XM_057951177.1
CAATCCATACACGTGTGTATATATATGTGTATATATTGAGTGTTGAGACAGATATCCTTGGTTTCATCCAATAATGGATATCTGTAGTTCTCTGCAGCTATCTCTGGAACTCGGAATCTGCAGTAGCCATGGAACCAACACACGATTTCGAAATTCAGAATCACGAGGCGAATTTTGTGTTCTCCGCTCTAATTTATCATCATTTTCGGTGTTTCAGGAACAGTGTGCTTGGAGTAGAGATCTTTCAAAGAGGATAAAGA...

XM_057951176.1
TGAGACAGATATCCTTGGTTTCATCCAATAATGGATATCTGTAGTTCTCTGCAGCTATCTCTGGAACTCGGAATCTGCAGTAGCCATGGAACCAACACACGATTTCGACTGCAGAATTCAGAATCACGAGGCGAATTTTGTGTTCTCCGCTCTAATTTATCATCATTTTCGGTGTTTCAGGAACAGTGTGCTTGGAGTAGAGATCTTTCAAAGAGGATAAAGAGACGAGCATGCACCATCTCCCCTAGGAATCATCAGCT...

CDS

2 records

下载 CDS FASTA

LOC131021856
ATGGATATCTGTAGTTCTCTGCAGCTATCTCTGGAACTCGGAATCTGCAGTAGCCATGGAACCAACACACGATTTCGAAATTCAGAATCACGAGGCGAATTTTGTGTTCTCCGCTCTAATTTATCATCATTTTCGGTGTTTCAGGAACAGTGTGCTTGGAGTAGAGATCTTTCAAAGAGGATAAAGAGACGAGCATGCACCATCTCCCCTAGGAATCATCAGCTTAAATGTCACTGTTTTGTAAATAGAGTGCCCTCTTT...

LOC131021856
ATGGATATCTGTAGTTCTCTGCAGCTATCTCTGGAACTCGGAATCTGCAGTAGCCATGGAACCAACACACGATTTCGACTGCAGAATTCAGAATCACGAGGCGAATTTTGTGTTCTCCGCTCTAATTTATCATCATTTTCGGTGTTTCAGGAACAGTGTGCTTGGAGTAGAGATCTTTCAAAGAGGATAAAGAGACGAGCATGCACCATCTCCCCTAGGAATCATCAGCTTAAATGTCACTGTTTTGTAAATAGAGTGCC...

Protein

2 records

下载 Protein FASTA

XP_057807159.1
MDICSSLQLSLELGICSSHGTNTRFRLQNSESRGEFCVLRSNLSSFSVFQEQCAWSRDLSKRIKRRACTISPRNHQLKCHCFVNRVPSLDATSIKSATLTLARSLNRLPGNPHVIKLASAVGFVIFAIWGLRPLVRQSRNIFLGKSDSSWRRSSTFHVTASYIQPLLLWAGAIYICRALDPMILPSEGGQIVKRRLLNFVRSLSTVLAFAYLFSSVIQQAQKFFMETNELTDASNMGFQFVGRTVYTAIWVAAVSLFMEL...

XP_057807160.1
MDICSSLQLSLELGICSSHGTNTRFRNSESRGEFCVLRSNLSSFSVFQEQCAWSRDLSKRIKRRACTISPRNHQLKCHCFVNRVPSLDATSIKSATLTLARSLNRLPGNPHVIKLASAVGFVIFAIWGLRPLVRQSRNIFLGKSDSSWRRSSTFHVTASYIQPLLLWAGAIYICRALDPMILPSEGGQIVKRRLLNFVRSLSTVLAFAYLFSSVIQQAQKFFMETNELTDASNMGFQFVGRTVYTAIWVAAVSLFMELLG...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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