Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr04G002761`

染色体: Chr04 坐标: 43354008-43357575 链方向: - 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr04G002761`
名称	SmilChr04G002761
描述	uncharacterized protein At4g38062
染色体 / SeqID	Chr04 / NC_080390.1
坐标与链方向	43354008 - 43357575 / `-`

ID 对照

NCBI Gene ID	`LOC131021858`
GeneID	`131021858`
locus_tag	`-`
NCBI Name	`LOC131021858`
原始查询	`SmilChr04G002761`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	basic helix loop helix (bHLH) DNA-binding superfamily protein [Source:NCBI gene (formerly Entrezgene);Acc:28720214]; symbol=AT4G38062; hit=AT4G38062; species=arabidopsis; confidence=medium
产物	basic helix loop helix (bHLH) DNA-binding superfamily protein [Source:NCBI gene (formerly Entrezgene);Acc:28720214]; symbol=AT4G38062; hit=AT4G38062; species=arabidopsis; confidence=medium
Arabidopsis	`AT4G38062` (AT4G38062) basic helix loop helix (bHLH) DNA-binding superfamily protein [Source:NCBI gene (formerly Entrezgene);Acc:28720214] identity=44.5; qcov=0.63; evalue=8.64e-116; confidence=medium
Rice	`Os03g0691500` - identity=34.6; qcov=0.748; evalue=8.19e-93; confidence=low
GO	-
KEGG	-
Pfam	PF30964 (At4g38062_N); PF30966 (At4g38062_C)
InterPro	-
eggNOG	-
NR	GeneID:131021858

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Nucleus	细胞核	0.40000	`XP_057807163.1`
2	Cytosol	细胞质基质	0.40000	`XP_057807163.1`
3	Cytoplasm	细胞质	0.20000	`XP_057807163.1`
4	Cytoskeleton	细胞骨架	0.20000	`XP_057807163.1`
5	Chromosome	染色体	0.00000	`XP_057807163.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr4:43354094`	`T`	`TGG`	2bp_insertion	frameshift_variant	4	B46,B81,C6,C80
`Chr4:43354094`	`T`	`TGG`	2bp_insertion	CDS_variant	4	B46,B81,C6,C80
`Chr4:43354786`	`C`	`T`	EMS_canonical_SNV	CDS_variant	4	B10,B114,B117,B59
`Chr4:43355050`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B31
`Chr4:43355131`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	B10,B59
`Chr4:43355944`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B46
`Chr4:43355991`	`G`	`A`	EMS_canonical_SNV	CDS_variant	5	B65,B82,B84,C57,C60
`Chr4:43356032`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B67
`Chr4:43356041`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	B10,B59
`Chr4:43356407`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	B10,B59

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057807163.1

861 aa

430

861

At4g38062_N

At4g38062_C

PF30964 At4g38062_N 14-426 aa PF30966 At4g38062_C 464-648 aa PF30966 At4g38062_C 657-819 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057807163.1`	Pfam	`PF30964`	At4g38062_N	Coiled-coil	14	426	7.3e-167	556.1	At4g38062-like N-terminal region
`XP_057807163.1`	Pfam	`PF30966`	At4g38062_C	Coiled-coil	464	648	8.2e-77	259.7	At4g38062-like C-terminal region
`XP_057807163.1`	Pfam	`PF30966`	At4g38062_C	Coiled-coil	657	819	8.2e-77	259.7	At4g38062-like C-terminal region

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

1 records

下载 cDNA FASTA

XM_057951180.1
GTTGGAGTTCGACCTCACATAAATTCAAACTCCAACGGCTACTTTCCTAACCAACTTCTTTCACTTTTTCCTCTCACACTTCCATCTTGTTCAAACACATACGTATTTCGGCAAAGAACACACACACACACACACACTGATGATATCGAATTCCCCAACCTCTATCTAATGCGAGCTGATTTCTTGAATCTGGGAGAAACAGGTTTTGTCTGCAGTAGTCGTTGCAAAATCAGAAAATGGATGCCGTGTATCAAGAACTT...

CDS

1 records

下载 CDS FASTA

LOC131021858
ATGGATGCCGTGTATCAAGAACTTGACGAGGCTAAAGCTGAGGTTGAAAAGCTGAGAGAGCAATATCGTGTTAAAGTTGAATTAGCTGAAACTTTAAAGAGATCTCACAATGACCAAGTGAGCAAGAATAAGGAGGCAAGTTTGAAGTTAGAGAAACTAGCTGAGGAACTAAATGAGAAACGAAGTGAAATCTCTACTACCAAGCAAATGTATGATGAGCTCAAGTCTAATCTGACAGAGAAAGAATCGATCATCAGGAG...

Protein

1 records

下载 Protein FASTA

XP_057807163.1
MDAVYQELDEAKAEVEKLREQYRVKVELAETLKRSHNDQVSKNKEASLKLEKLAEELNEKRSEISTTKQMYDELKSNLTEKESIIRSITSAHDKLRLDCNEKLHKFEEENKALASALDDSNGKKDYQEQQICALKQEVEGLKRLLNVSQKKCSERESGTVASKDLGVREDAFFKLEEKKKKLEDQLKWKKEQFVHLEEAHEKLRKQFKMREKEWEKERAELLHGISSLETKLESQTRISQDLQHRLEMCNNALAHAETKR...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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JBrowse

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