Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr04G002769`

染色体: Chr04 坐标: 43489101-43494377 链方向: + 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr04G002769`
名称	SmilChr04G002769
描述	AP2-like ethylene-responsive transcription factor AIL6
染色体 / SeqID	Chr04 / NC_080390.1
坐标与链方向	43489101 - 43494377 / `+`

ID 对照

NCBI Gene ID	`LOC131021866`
GeneID	`131021866`
locus_tag	`-`
NCBI Name	`LOC131021866`
原始查询	`SmilChr04G002769`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	AP2-like ethylene-responsive transcription factor AIL6
产物	AP2-like ethylene-responsive transcription factor AIL6
Arabidopsis	`AT5G10510` (AIL6) AINTEGUMENTA-like 6 [Source:NCBI gene (formerly Entrezgene);Acc:830915] identity=51.7; qcov=1.31; evalue=1.47e-150; confidence=high
Rice	`Os06g0657500` (OsPLT2) - identity=79.2; qcov=0.471; evalue=2.1e-119; confidence=medium
GO	GO:0003677 (DNA binding); GO:0003700 (DNA-binding transcription factor activity); GO:0006355 (regulation of DNA-templated transcription)
KEGG	-
Pfam	PF00847 (AP2)
InterPro	-
eggNOG	-
NR	GeneID:131021866

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Nucleus	细胞核	1.00000	`XP_057807171.1`
2	Chromosome	染色体	0.00000	`XP_057807171.1`
3	Centromere	着丝粒	0.00000	`XP_057807171.1`
4	Chromatin	染色质	0.00000	`XP_057807171.1`
5	Telomere	端粒	0.00000	`XP_057807171.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr4:43490129`	`TG`	`T`	1bp_deletion	frameshift_variant	1	B95
`Chr4:43490129`	`TG`	`T`	1bp_deletion	CDS_variant	1	B95
`Chr4:43490284`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B128
`Chr4:43490302`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	C73
`Chr4:43490361`	`C`	`T`	EMS_canonical_SNV	CDS_variant	4	A21,B115,B91,C61
`Chr4:43490385`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	D6
`Chr4:43490545`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	C40
`Chr4:43490551`	`C`	`T`	EMS_canonical_SNV	CDS_variant	5	A21,B115,B70,B91,C61
`Chr4:43492699`	`C`	`T`	EMS_canonical_SNV	CDS_variant	4	B112,B136,B44,C55
`Chr4:43492794`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B1
`Chr4:43492837`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	B43,C64
`Chr4:43492960`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B31

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057807171.1

451 aa

226

451

AP2

PF00847 AP2 187-244 aa PF00847 AP2 289-338 aa

XP_057807172.1

448 aa

224

448

AP2

PF00847 AP2 286-335 aa

XP_057807173.1

448 aa

224

448

AP2

PF00847 AP2 286-335 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057807171.1`	Pfam	`PF00847`	AP2	Domain	187	244	9.4e-21	74.6	AP2 domain
`XP_057807171.1`	Pfam	`PF00847`	AP2	Domain	289	338	9.4e-21	74.6	AP2 domain
`XP_057807172.1`	Pfam	`PF00847`	AP2	Domain	286	335	2.9e-17	63.4	AP2 domain
`XP_057807173.1`	Pfam	`PF00847`	AP2	Domain	286	335	2.9e-17	63.4	AP2 domain

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

3 records

下载 cDNA FASTA

XM_057951188.1
TATTTACCTATACTTGCTTCTCTCCTTTTCTTACTTTTACTTTTATTTGTTTATATAATATGGACACAAACCGTCTTCCCTCTTCTATTTGCTTGTCAGTAATATCTCTTCCTCTTCTTCTTCTCCAACTTTGCATGTGCCCTTCTTCTACTCTTCAAGCCTTTCAACACGCATTCTAATCACTACCTTTTTGGGTTTTGTGTTGCTCTTCCATTTACACCCAAAAAAAATAAAAAAGGAAACAAGCTTTGATTTTCGAC...

XM_057951189.1
TATTTACCTATACTTGCTTCTCTCCTTTTCTTACTTTTACTTTTATTTGTTTATATAATATGGACACAAACCGTCTTCCCTCTTCTATTTGCTTGTCAGTAATATCTCTTCCTCTTCTTCTTCTCCAACTTTGCATGTGCCCTTCTTCTACTCTTCAAGCCTTTCAACACGCATTCTAATCACTACCTTTTTGGGTTTTGTGTTGCTCTTCCATTTACACCCAAAAAAAATAAAAAAGGAAACAAGCTTTGATTTTCGAC...

CDS

3 records

下载 CDS FASTA

LOC131021866
ATGGCTCCAGATAACAACTGGCTTTCATTTTCACTATCTTCAGTAGAAATGGAGCTCAACCCTTCTTCTCAGCTGCAGTCCACCTCATCTCATTCTCACCATTTCTACCCTTTCACGGATAACTTCTATTCCAATGGGTGGCCTAATCAGAAAGCTGAGGCCATGTACCCCCAAGGCGAACTCAAGGAACACGGCGGCGTCTTCACCACCTACATGCAGCCGCCCAAGCTGGAGGACTTCTTCGCCGACGGTGACTCCAC...

Protein

3 records

下载 Protein FASTA

XP_057807171.1
MAPDNNWLSFSLSSVEMELNPSSQLQSTSSHSHHFYPFTDNFYSNGWPNQKAEAMYPQGELKEHGGVFTTYMQPPKLEDFFADGDSTETQDSSLTHIYDHHHTTTYQDLNAISGFQAFSANSGSEVDDPALTQSPVESASELVAYSQPPIATTNALSLRVNDHKNSVADSGTCKKIADTFGQRTSIYRGVTRHRWTGRYEAHLWDNSCRREGQARKGRQVYLGGYDKEDKAARSYDLAALKYWGPTATTNFPIANYTKEL...

XP_057807172.1
MAPDNNWLSFSLSSVEMELNPSSQLQSTSSHSHHFYPFTDNFYSNGWPNQKAEAMYPQGELKEHGGVFTTYMQPPKLEDFFADGDSTETQDSSLTHIYDHHHTTTYQDLNAISGFQAFSANSGSEVDDPALTQSPVESASELVAYSQPPIATTNALSLRVNDHKNSVADSGTCKKIADTFGQRTSIYRGVTRHRWTGRYEAHLWDNSCRREGQARKGRQGGYDKEDKAARSYDLAALKYWGPTATTNFPIANYTKELEEM...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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