Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr04G002784`

染色体: Chr04 坐标: 43639310-43642906 链方向: - 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr04G002784`
名称	SmilChr04G002784
描述	mannan endo-1,4-beta-mannosidase 4-like
染色体 / SeqID	Chr04 / NC_080390.1
坐标与链方向	43639310 - 43642906 / `-`

ID 对照

NCBI Gene ID	`LOC131021876`
GeneID	`131021876`
locus_tag	`-`
NCBI Name	`LOC131021876`
原始查询	`SmilChr04G002784`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; KEGG smil; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	mannan endo-1,4-beta-mannosidase 4-like
产物	mannan endo-1%2C4-beta-mannosidase 4-like
Arabidopsis	`AT5G66460` (MAN7) Glycosyl hydrolase superfamily protein [Source:NCBI gene (formerly Entrezgene);Acc:836778] identity=50.5; qcov=0.995; evalue=1.16e-137; confidence=high
Rice	`Os01g0663300` - identity=48.5; qcov=0.992; evalue=2.68e-129; confidence=high
GO	GO:0004553 (hydrolase activity, hydrolyzing O-glycosyl compounds); GO:0005975 (carbohydrate metabolic process)
KEGG	smil00051 (Fructose and mannose metabolism - Salvia miltiorrhiza (redroot sage)); smil01100 (Metabolic pathways - Salvia miltiorrhiza (redroot sage))
Pfam	PF00150 (Cellulase); PF26410 (GH5_mannosidase)
InterPro	-
eggNOG	-
NR	GeneID:131021876

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Secreted	分泌到胞外	1.00000	`XP_057807183.1`
2	Cell wall	细胞壁	0.20000	`XP_057807183.1`
3	Nucleus	细胞核	0.00000	`XP_057807184.1`
4	Chromosome	染色体	0.00000	`XP_057807184.1`
5	Centromere	着丝粒	0.00000	`XP_057807184.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr4:43639583`	`G`	`A`	EMS_canonical_SNV	CDS_variant	4	A3,B113,B68,B88
`Chr4:43639644`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	C4
`Chr4:43639660`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	A5,B29
`Chr4:43639680`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	B38,B39
`Chr4:43639692`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	C17
`Chr4:43639743`	`G`	`A`	EMS_canonical_SNV	CDS_variant	3	C17,C77,D6
`Chr4:43639745`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	C4
`Chr4:43639901`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	A7,C56
`Chr4:43639930`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B10
`Chr4:43639932`	`C`	`T`	EMS_canonical_SNV	CDS_variant	4	A11,B2,C62,D2
`Chr4:43639935`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B104
`Chr4:43640043`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B128

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057807183.1

404 aa

202

404

GH5_mannosidase

Cellulase

PF26410 GH5_mannosidase 33-363 aa PF00150 Cellulase 50-328 aa

XP_057807184.1

376 aa

188

376

GH5_mannosidase

Cellulase

PF26410 GH5_mannosidase 69-335 aa PF00150 Cellulase 73-300 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057807183.1`	Pfam	`PF26410`	GH5_mannosidase	Domain	33	363	3.4e-54	185.0	GH family 5 beta-mannosidase-like
`XP_057807183.1`	Pfam	`PF00150`	Cellulase	Domain	50	328	1.9e-11	44.7	Cellulase (glycosyl hydrolase family 5)
`XP_057807184.1`	Pfam	`PF26410`	GH5_mannosidase	Domain	69	335	2.9e-49	168.7	GH family 5 beta-mannosidase-like
`XP_057807184.1`	Pfam	`PF00150`	Cellulase	Domain	73	300	1.1e-10	42.2	Cellulase (glycosyl hydrolase family 5)

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

2 records

下载 cDNA FASTA

XM_057951200.1
TTAGTGGGCAAATGCAAAATTCCCGTTTCATGCCTCAACTTATTTCGCAATGATCACAACATGATCTACATAAAGAAAAAATATTAACACAATCTCCACAAGCAATTTGTACAACGATAATAGCCTGCAAGCAATAACCCATCCATCTCCCATACTTGAAACTTGTAATTAATGTAATCCTGGAGTGCAATATTTTGCTTATAAATACACCATTTTCCCATGAGATTGAAGACAACACATTTCGTCGAAAATGTGGAGAA...

XM_057951201.1
AAGAAAAAATATTAACACAATCTCCACAAGCAATTTGTACAACGATAATAGCCTGCAAGCAATAACCCATCCATCTCCCATACTTGAAACTTGTAATTAATGTAATCCTGGAGTGCAATATTTTGCTTATAAATACACCATTTTCCCATGAGATTGAAGACAACACATTTCGTCGAAAATGTGGAGAAAGAGTTTGGGTTTTGTGTTAGTGTTTGCAATTGCAGGTATTTTAATGGGCAAAGGAGGCGAGGCGAGGCGGG...

CDS

2 records

下载 CDS FASTA

LOC131021876
ATGTGGAGAAAGAGTTTGGGTTTTGTGTTAGTGTTTGCAATTGCAGGTATTTTAATGGGCAAAGGAGGCGAGGCGAGGCGGGTGAGAGGTGGTGGGTTTGTGGAGACAAGAGGCAGGCAGTTTATGATGAATGGAAAGGCCTTCTTTTTCAATGGCTTCAATTCTTATTGGTTAATGACATGGGCTTTCAATGATGGAGGTTCTAAGCCCTTGCAAAGCTCTCCGGGCTCATATAACCAGGATATGTTTAAGGGATTGGA...

LOC131021876
ATGTGGAGAAAGAGTTTGGGTTTTGTGTTAGTGTTTGCAATTGCAGGTATTTTAATGGGCAAAGGAGGCGAGGCGAGGCGGGTGAGAGGTGGTGGGTTTGTGGAGACAAGAGGCAGGCAGTTTATGATGAATGGAAAGGCCTTCTTTTTCAATGGCTTCAATTCTTATTGGTTAATGTACATGGCTTCGGATCCTTCCACTAGGGTTAAGGTGACAGAAACCTTTGCGCAGGCTTCTAAATATGGAATGAATGTGGGCAG...

Protein

2 records

下载 Protein FASTA

XP_057807183.1
MWRKSLGFVLVFAIAGILMGKGGEARRVRGGGFVETRGRQFMMNGKAFFFNGFNSYWLMYMASDPSTRVKVTETFAQASKYGMNVGRTWAFNDGGSKPLQSSPGSYNQDMFKGLDFVVSEAPKHGIHLIFTLVNNWDAYGGKKQYVQWAREQGQSLNNDDHFFTNSIVKGYFKNHIKAVLTRNNSETGVAYKDDPTILAWELMNEPRSQSDLSGKAIQDWVVEMAAHVKSIDKKHLVDIGLEGFYGEEKKQNNPGGVRLG...

XP_057807184.1
MWRKSLGFVLVFAIAGILMGKGGEARRVRGGGFVETRGRQFMMNGKAFFFNGFNSYWLMTWAFNDGGSKPLQSSPGSYNQDMFKGLDFVVSEAPKHGIHLIFTLVNNWDAYGGKKQYVQWAREQGQSLNNDDHFFTNSIVKGYFKNHIKAVLTRNNSETGVAYKDDPTILAWELMNEPRSQSDLSGKAIQDWVVEMAAHVKSIDKKHLVDIGLEGFYGEEKKQNNPGGVRLGTDFISNNRIPQVDFATIHLYPDQWLPGA...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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