当前解析结果
SmilChr04G002792| 统一新 Gene ID | SmilChr04G002792 |
|---|---|
| 名称 | SmilChr04G002792 |
| 描述 | myosin-binding protein 2-like |
| 染色体 / SeqID | Chr04 / NC_080390.1 |
| 坐标与链方向 | 43799604 - 43801295 / - |
| NCBI Gene ID | LOC131021887 |
|---|---|
| GeneID | 131021887 |
| locus_tag | - |
| NCBI Name | LOC131021887 |
| 原始查询 | SmilChr04G002792 |
| 来源 | GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | myosin-binding protein 2-like |
| 产物 | myosin-binding protein 2-like |
| Arabidopsis | AT1G74830 (AT1G74830)myosin-binding protein, putative (Protein of unknown function, DUF593) [Source:NCBI gene (formerly Entrezgene);Acc:843822] identity=26.8; qcov=1.19; evalue=1.04e-39; confidence=low |
| Rice | Os03g0259900- identity=65.1; qcov=0.191; evalue=2.67e-25; confidence=weak |
| GO | GO:0017022 (myosin binding) |
| KEGG | - |
| Pfam | PF04576 (Zein-binding) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:131021887 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Nucleus membrane | 核膜 | 0.40000 | XP_057807195.1 |
| 2 | Cytoplasm | 细胞质 | 0.40000 | XP_057807195.1 |
| 3 | Endoplasmic reticulum | 内质网 | 0.40000 | XP_057807195.1 |
| 4 | Endoplasmic reticulum membrane | 内质网膜 | 0.20000 | XP_057807195.1 |
| 5 | Nucleus | 细胞核 | 0.00000 | XP_057807195.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变;完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr4:43799882 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | C35 |
Chr4:43799947 |
C |
T |
EMS_canonical_SNV | CDS_variant | 5 | B53,B74,B78,C45,C82 |
Chr4:43799956 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | C56,C58 |
Chr4:43799970 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B99 |
Chr4:43799973 |
CA |
C |
1bp_deletion | frameshift_variant | 46 | A9,B111,B119,B12,B120,B123,B124,B125,B134,B135,B136,B14,B21,B25,B3,B4,B41,B55,B60,B61,B62,B63,B76,B77,B90,B92,B94,B95,B98,B99,C14,C16,C17,C2,C22,C24,C29,C31,C33,C47,C5,C72,C87,D2,D4,D8 |
Chr4:43800168 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B1 |
Chr4:43800174 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B65 |
Chr4:43800187 |
C |
T |
EMS_canonical_SNV | CDS_variant | 3 | A3,B113,B60 |
Chr4:43800199 |
G |
A |
EMS_canonical_SNV | CDS_variant | 4 | B10,B114,B117,D11 |
Chr4:43800208 |
C |
T |
EMS_canonical_SNV | CDS_variant | 4 | B10,B114,B117,D11 |
Chr4:43800227 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | C17 |
Chr4:43800248 |
G |
A |
EMS_canonical_SNV | CDS_variant | 4 | B10,B114,B117,D11 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan;位置为对应蛋白序列上的氨基酸坐标。
XP_057807195.1PF04576
Zein-binding 265-339 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057807195.1 |
Pfam | PF04576 |
Zein-binding | Coiled-coil | 265 | 339 | 1.6e-26 | 93.1 | Zein-binding |
每个公开基因均提供参考注释对应的转录本序列;蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补,使最终 FASTA 为转录方向 5′→3′。