Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr04G002803`

染色体: Chr04 坐标: 43944697-43947086 链方向: + 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr04G002803`
名称	SmilChr04G002803
描述	protein OPI10 homolog
染色体 / SeqID	Chr04 / NC_080390.1
坐标与链方向	43944697 - 43947086 / `+`

ID 对照

NCBI Gene ID	`LOC131021900`
GeneID	`131021900`
locus_tag	`-`
NCBI Name	`LOC131021900`
原始查询	`SmilChr04G002803`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	protein OPI10 homolog
产物	protein OPI10 homolog
Arabidopsis	`AT1G66080` (AT1G66080) hikeshi-like protein [Source:NCBI gene (formerly Entrezgene);Acc:842922] identity=81; qcov=1; evalue=3.13e-114; confidence=high
Rice	`Os03g0237500` - identity=52.1; qcov=0.995; evalue=1.65e-53; confidence=high
GO	GO:0005634 (nucleus); GO:0005829 (cytosol); GO:0006606 (protein import into nucleus); GO:0061608 (nuclear import signal receptor activity)
KEGG	-
Pfam	PF05603 (Hikeshi-like_N); PF21057 (Hikeshi-like_C)
InterPro	-
eggNOG	-
NR	GeneID:131021900

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Nucleus	细胞核	1.00000	`XP_057807210.1`
2	Cytoplasm	细胞质	0.80000	`XP_057807210.1`
3	Cytosol	细胞质基质	0.40000	`XP_057807210.1`
4	Chromosome	染色体	0.00000	`XP_057807210.1`
5	Centromere	着丝粒	0.00000	`XP_057807210.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr4:43945058`	`AC`	`A`	1bp_deletion	frameshift_variant	1	B59
`Chr4:43945058`	`AC`	`A`	1bp_deletion	CDS_variant	1	B59
`Chr4:43945270`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B114
`Chr4:43945558`	`GA`	`G`	1bp_deletion	CDS_variant	1	B108

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057807210.1

189 aa

189

Hikeshi-like_N

Hikeshi-like_C

PF05603 Hikeshi-like_N 17-120 aa PF21057 Hikeshi-like_C 133-185 aa

XP_057807211.1

189 aa

189

Hikeshi-like_N

Hikeshi-like_C

PF05603 Hikeshi-like_N 17-120 aa PF21057 Hikeshi-like_C 133-185 aa

XP_057807212.1

189 aa

189

Hikeshi-like_N

Hikeshi-like_C

PF05603 Hikeshi-like_N 17-120 aa PF21057 Hikeshi-like_C 133-185 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057807210.1`	Pfam	`PF05603`	Hikeshi-like_N	Domain	17	120	2.5e-11	44.2	Hikeshi-like, N-terminal domain
`XP_057807210.1`	Pfam	`PF21057`	Hikeshi-like_C	Domain	133	185	5.6e-11	42.9	Hikeshi-like, C-terminal domain
`XP_057807211.1`	Pfam	`PF05603`	Hikeshi-like_N	Domain	17	120	2.5e-11	44.2	Hikeshi-like, N-terminal domain
`XP_057807211.1`	Pfam	`PF21057`	Hikeshi-like_C	Domain	133	185	5.6e-11	42.9	Hikeshi-like, C-terminal domain
`XP_057807212.1`	Pfam	`PF05603`	Hikeshi-like_N	Domain	17	120	2.5e-11	44.2	Hikeshi-like, N-terminal domain
`XP_057807212.1`	Pfam	`PF21057`	Hikeshi-like_C	Domain	133	185	5.6e-11	42.9	Hikeshi-like, C-terminal domain

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

3 records

下载 cDNA FASTA

XM_057951229.1
CCGATCAGAAAAAAAAAAAAAAAACATTTCTAATCCTATAATAAAGTGTAGCAACGATGCGAAAGAATATGTATATAATCAGAAAGTTTATTAGCACAATCTGGTTTCCTTTTCCCTTGCGAATTTTCCATTTTATACTGGATGCTTCTGGATTGTTCCACGCAAAGGACCTCTGACGACTTGTCAAAACCCGCTTCTTCCTCCACAAATTCCCGCTTCATGTCTCCCCCAAGCCCAAATCGGCATTGAATCGCAGATCG...

XM_057951228.1
CCGATCAGAAAAAAAAAAAAAAAACATTTCTAATCCTATAATAAAGTGTAGCAACGATGCGAAAGAATATGTATATAATCAGAAAGTTTATTAGCACAATCTGGTTTCCTTTTCCCTTGCGAATTTTCCATTTTATACTGGATGCTTCTGGATTGTTCCACGCAAAGGACCTCTGACGACTTGTCAAAACCCGCTTCTTCCTCCACAAATTCCCGCTTCATGTCTCCCCCAAGCCCAAATCGGCATTGAATCGCAGATCG...

CDS

3 records

下载 CDS FASTA

LOC131021900
ATGTTCGGCGTCGTCTTCCCCAATCGCAGTTTCCCTCTCGACATCTCCACCTTCTCCCAAATCGACGCTACCCACTGGGTCCTCGACATGAACCACTTCGTCGGAGAATCCTACGATTCCATCCGAGAAGTGTGCATCTTCCTGCTCAACAACTTCACGCTGCCGCCGGACAAGGCCCTCGCCGTCTACATCCAGTCTCCGGGCAGCCCCTTCCTCTTCTGCGGAGCCGTGACGCCCGCCCGGCCCTCCGCCGTGCTCTC...

Protein

3 records

下载 Protein FASTA

XP_057807210.1
MFGVVFPNRSFPLDISTFSQIDATHWVLDMNHFVGESYDSIREVCIFLLNNFTLPPDKALAVYIQSPGSPFLFCGAVTPARPSAVLSLPWPDPGSGGIPQLTADSTPLSAKIGVSVEDLSALPSLDVAAERKIERLALKVGENLFNFMQSFCAVDGSKLIVPTDILDRWFKKFQERAKRDPEYLKGFAL

XP_057807211.1
MFGVVFPNRSFPLDISTFSQIDATHWVLDMNHFVGESYDSIREVCIFLLNNFTLPPDKALAVYIQSPGSPFLFCGAVTPARPSAVLSLPWPDPGSGGIPQLTADSTPLSAKIGVSVEDLSALPSLDVAAERKIERLALKVGENLFNFMQSFCAVDGSKLIVPTDILDRWFKKFQERAKRDPEYLKGFAL

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

下载 upstream 下载 downstream 下载 upstream + gene + downstream

JBrowse

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