Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID,以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因,再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。
示例

当前解析结果

SmilChr04G002804

染色体: Chr04 坐标: 43945681-43947066 链方向: - 类型: protein_coding

基本信息

统一新 Gene IDSmilChr04G002804
名称SmilChr04G002804
描述microtubule-destabilizing protein 60-like
染色体 / SeqIDChr04 / NC_080390.1
坐标与链方向43945681 - 43947066 / -

ID 对照

NCBI Gene IDLOC131021901
GeneID131021901
locus_tag-
NCBI NameLOC131021901
原始查询SmilChr04G002804

查看完整 ID 对照表

功能注释

来源GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述microtubule-destabilizing protein 60-like
产物microtubule-destabilizing protein 60-like
ArabidopsisAT5G37478 (AT5G37478)
TPX2 (targeting protein for Xklp2) protein family [Source:NCBI gene (formerly Entrezgene);Acc:2746163]
identity=56.5; qcov=0.692; evalue=1.68e-38; confidence=medium
RiceOs03g0212600
-
identity=44.2; qcov=0.667; evalue=2.01e-23; confidence=medium
GOGO:0005880 (nuclear microtubule); GO:0008017 (microtubule binding); GO:0030295 (protein kinase activator activity); GO:0032147 (activation of protein kinase activity); GO:0060236 (regulation of mitotic spindle organization); GO:0072686 (mitotic spindle); GO:0090307 (mitotic spindle assembly)
KEGG-
PfamPF06886 (TPX2)
InterPro-
eggNOG-
NRGeneID:131021901

打开注释模块

亚细胞定位 Top 5

Rank定位位置中文ScoreProtein ID
1 Cytoskeleton 细胞骨架 1.00000 XP_057807213.1
2 Spindle Spindle 0.60000 XP_057807214.1
3 Spindle pole Spindle pole 0.20000 XP_057807214.1
4 Nucleus 细胞核 0.00000 XP_057807213.1
5 Chromosome 染色体 0.00000 XP_057807213.1

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变;完整结果可进入 EMS 突变库继续筛选或下载。

位置 REF ALT 类型 影响 携带材料数 材料
Chr4:43946602 G GA 1bp_insertion frameshift_variant 4 B42,B43,C64,C66
Chr4:43946602 G GA 1bp_insertion CDS_variant 4 B42,B43,C64,C66
Chr4:43946738 G A EMS_canonical_SNV CDS_variant 1 B52

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan;位置为对应蛋白序列上的氨基酸坐标。

XP_057807213.1
165 aa
N
1
82
165
TPX2
C
PF06886 TPX2 72-146 aa
XP_057807214.1
156 aa
N
1
78
156
TPX2
C
PF06886 TPX2 63-137 aa
Protein ID 来源 结构域编号 结构域名称 类型 起始 aa 终止 aa E-value Score 说明
XP_057807213.1 Pfam PF06886 TPX2 Domain 72 146 8.4e-21 74.4 Targeting protein for Xklp2 (TPX2) domain
XP_057807214.1 Pfam PF06886 TPX2 Domain 63 137 6.9e-21 74.7 Targeting protein for Xklp2 (TPX2) domain

cDNA / CDS / Protein 序列

下载基因组 DNA(仅基因区域)

每个公开基因均提供参考注释对应的转录本序列;蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

2 records

下载 cDNA FASTA
XM_057951230.1
TTTGTTATAAGAAAACCAAACACGAGAAACATATGCACATATACAGTCAATACATATGCGTACATGAGAGCGAGATCTAATCAGAAAGTTTGGTGAAAAAGAGCAGCAAAAGTTGCTTATGATGCCGGTGATGGAGCAACAACAAGTGATCGATTTCTAAATGAAACATACAAATCTCCAAACCCCTTCTAAGCTCTCTCTGTATATATACTTGAGCTTCAGTTACACACTGCACACTCAATTAAAACTGATCAAGTAAT...
XM_057951231.1
GATCGATTTCTAAATGAAACATACAAATCTCCAAACCCCTTCTAAGCTCTCTCTGTATATATACTTGAGCTTCAGTTACACACTGCACACTCAATTAAAACTGATCAAGTAATCATGGAGAGCCCCAACAGGAAATCTGCTCAAAAGCCTGCAGTTTCATCGACTAATCGAGGATCAGCCAGAAATACCACGGGTTTGTTTCAGCCATCCATCAGCAATAGCAGCAACAGCAGCAGCAATTCCTCTTCTGGAGTTGTTGA...

CDS

2 records

下载 CDS FASTA
LOC131021901
ATGGAGAGCCCCAACAGGAAATCTGCTCAAAAGCCTGCAGTTTCATCGACTAATCGAGGATCAGCCAGAAATACCACGGGTTTGTTTCAGCCATCCATCAGCAATAGCAGCAACAGCAGCAGCAATTCCTCTTCTGGAGTTGTTGACAAGTCTTGGATAAAAGAAAACACAAAGCCATCAGAGTTGAGACTCCATACGCAGCAACGAGCAGCACAGCGCGCAAGATACAACTCCTCTGTGGCAATCAAATTGTACATGAT...
LOC131021901
ATGGCTAATAATCTGTATTTTTGGCTTCTCTTCCCGCTCAAAGTTACTATTACTCCACAGCCTGCAGTTTCATCGACTAATCGAGGATCAGCCAGAAATACCACGGGTTTGTTTCAGCCATCCATCAGCAATAGCAGCAACAGCAGCAGCAATTCCTCTTCTGGAGTTGTTGACAAGTCTTGGATAAAAGAAAACACAAAGCCATCAGAGTTGAGACTCCATACGCAGCAACGAGCAGCACAGCGCGCAAGATACAACTC...

Protein

2 records

下载 Protein FASTA
XP_057807213.1
MANNLYFWLLFPLKVTITPQPAVSSTNRGSARNTTGLFQPSISNSSNSSSNSSSGVVDKSWIKENTKPSELRLHTQQRAAQRARYNSSVAIKLYMIEQHKKQVEKVLKVIEEEEVRMLRREMVPRAQLMPLFDKPFSPQRSTRPLTVPREPSFKMVACKHDCSCR
XP_057807214.1
MESPNRKSAQKPAVSSTNRGSARNTTGLFQPSISNSSNSSSNSSSGVVDKSWIKENTKPSELRLHTQQRAAQRARYNSSVAIKLYMIEQHKKQVEKVLKVIEEEEVRMLRREMVPRAQLMPLFDKPFSPQRSTRPLTVPREPSFKMVACKHDCSCR

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补,使最终 FASTA 为转录方向 5′→3′。

下载 upstream 下载 downstream 下载 upstream + gene + downstream

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