当前解析结果
SmilChr04G002812| 统一新 Gene ID | SmilChr04G002812 |
|---|---|
| 名称 | SmilChr04G002812 |
| 描述 | cysteine-rich receptor-like protein kinase 2 |
| 染色体 / SeqID | Chr04 / NC_080390.1 |
| 坐标与链方向 | 44130870 - 44134045 / - |
| NCBI Gene ID | LOC131021908 |
|---|---|
| GeneID | 131021908 |
| locus_tag | - |
| NCBI Name | LOC131021908 |
| 原始查询 | SmilChr04G002812 |
| 来源 | GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | cysteine-rich receptor-like protein kinase 2 |
| 产物 | cysteine-rich receptor-like protein kinase 2 |
| Arabidopsis | AT1G70520 (CRK2)cysteine-rich RLK (RECEPTOR-like protein kinase) 2 [Source:NCBI gene (formerly Entrezgene);Acc:843389] identity=38.1; qcov=0.888; evalue=6.17e-119; confidence=medium |
| Rice | Os11g0470500- identity=51.4; qcov=0.931; evalue=0; confidence=high |
| GO | GO:0004672 (protein kinase activity); GO:0005524 (ATP binding); GO:0006468 (protein phosphorylation) |
| KEGG | - |
| Pfam | PF00069 (Pkinase); PF01657 (Stress-antifung); PF07714 (PK_Tyr_Ser-Thr) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:131021908 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Cell membrane | 细胞膜 | 1.00000 | XP_057807229.1 |
| 2 | Nucleus | 细胞核 | 0.00000 | XP_057807229.1 |
| 3 | Chromosome | 染色体 | 0.00000 | XP_057807229.1 |
| 4 | Centromere | 着丝粒 | 0.00000 | XP_057807229.1 |
| 5 | Chromatin | 染色质 | 0.00000 | XP_057807229.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr4:44131155 |
C |
CA |
1bp_insertion | frameshift_variant | 36 | A14,A19,A25,A4,B102,B105,B108,B109,B11,B110,B126,B129,B47,B49,B50,B64,B7,B72,B73,B81,B83,B93,B94,C37,C4,C41,C50,C52,C6,C7,C71,C79,C82,C9,D3,D9 |
Chr4:44131585 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | C4 |
Chr4:44131653 |
G |
A |
EMS_canonical_SNV | CDS_variant | 4 | A21,B122,B20,C38 |
Chr4:44132227 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | C17 |
Chr4:44132568 |
G |
A |
EMS_canonical_SNV | CDS_variant | 3 | A7,C56,C66 |
Chr4:44132796 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | C17 |
Chr4:44133777 |
G |
A |
EMS_canonical_SNV | CDS_variant | 4 | B125,B90,B92,C87 |
Chr4:44133934 |
GC |
G |
1bp_deletion | frameshift_variant | 1 | A22 |
Chr4:44133934 |
GC |
G |
1bp_deletion | CDS_variant | 1 | A22 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。
XP_057807229.1PF01657
Stress-antifung 51-143 aa
PF01657
Stress-antifung 156-251 aa
PF00069
Pkinase 338-607 aa
PF07714
PK_Tyr_Ser-Thr 341-607 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057807229.1 |
Pfam | PF01657 |
Stress-antifung | Family | 51 | 143 | 1.7e-26 | 93.5 | Salt stress response/antifungal |
XP_057807229.1 |
Pfam | PF01657 |
Stress-antifung | Family | 156 | 251 | 1.7e-26 | 93.5 | Salt stress response/antifungal |
XP_057807229.1 |
Pfam | PF00069 |
Pkinase | Domain | 338 | 607 | 2.2e-50 | 172.2 | Protein kinase domain |
XP_057807229.1 |
Pfam | PF07714 |
PK_Tyr_Ser-Thr | Domain | 341 | 607 | 4.3e-50 | 171.1 | Protein tyrosine and serine/threonine kinase |
每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。