Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr04G002830`

染色体: Chr04 坐标: 44420109-44422804 链方向: - 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr04G002830`
名称	SmilChr04G002830
描述	uncharacterized SmilChr04G002830
染色体 / SeqID	Chr04 / NC_080390.1
坐标与链方向	44420109 - 44422804 / `-`

ID 对照

NCBI Gene ID	`LOC131021926`
GeneID	`131021926`
locus_tag	`-`
NCBI Name	`LOC131021926`
原始查询	`SmilChr04G002830`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; KEGG smil; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	pre-mRNA-splicing factor ISY1-like protein [Source:NCBI gene (formerly Entrezgene);Acc:821412]; symbol=AT3G18790; hit=AT3G18790; species=arabidopsis; confidence=high
产物	pre-mRNA-splicing factor ISY1-like protein [Source:NCBI gene (formerly Entrezgene);Acc:821412]; symbol=AT3G18790; hit=AT3G18790; species=arabidopsis; confidence=high
Arabidopsis	`AT3G18790` (AT3G18790) pre-mRNA-splicing factor ISY1-like protein [Source:NCBI gene (formerly Entrezgene);Acc:821412] identity=72.8; qcov=1.01; evalue=6.78e-143; confidence=high
Rice	`Os02g0602500` (OJ1669_F01.12-2) - identity=64.6; qcov=1.04; evalue=2.24e-136; confidence=high
GO	GO:0000350 (generation of catalytic spliceosome for second transesterification step); GO:0000389 (mRNA 3'-splice site recognition); GO:0000974 (Prp19 complex); GO:0071013 (catalytic step 2 spliceosome); GO:0071014 (post-mRNA release spliceosomal complex); GO:0071020 (post-spliceosomal complex)
KEGG	smil03040 (Spliceosome - Salvia miltiorrhiza (redroot sage))
Pfam	PF06246 (Isy1)
InterPro	-
eggNOG	-
NR	GeneID:131021926

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Nucleus	细胞核	1.00000	`XP_057807250.1`
2	Nucleoplasm	核质	1.00000	`XP_057807250.1`
3	Nuclear speckle	核斑点	0.60000	`XP_057807250.1`
4	Nucleolar fibrillar center	Nucleolar fibrillar center	0.40000	`XP_057807250.1`
5	Chromosome	染色体	0.00000	`XP_057807250.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr4:44420803`	`C`	`T`	EMS_canonical_SNV	CDS_variant	3	C16,D3,D7
`Chr4:44421002`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B66
`Chr4:44422360`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	A24,C42
`Chr4:44422417`	`G`	`A`	EMS_canonical_SNV	stop_gained	5	A15,C38,C6,C72,D6
`Chr4:44422417`	`G`	`A`	EMS_canonical_SNV	CDS_variant	5	A15,C38,C6,C72,D6
`Chr4:44422438`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B74
`Chr4:44422456`	`G`	`A`	EMS_canonical_SNV	stop_gained	23	A15,A18,A23,B105,B119,B125,B2,B32,B39,B65,B71,B79,B84,B91,B99,C17,C22,C37,C56,C73,C86,D4,D5
`Chr4:44422459`	`G`	`A`	EMS_canonical_SNV	stop_gained	162	A10,A11,A13,A15,A16,A18,A19,A2,A20,A21,A23,A25,A3,A6,A7,A8,A9,B105,B106,B107,B110,B113,B114,B117,B118,B119,B12,B121,B122,B123,B124,B125,B126,B127,B128,B129,B13,B131,B132,B133,B134,B135,B136,B137,B138,B14,B140,B15,B16,B17,B19,B2,B20,B23,B24,B25,B28,B29,B30,B32,B34,B36,B38,B39,B4,B41,B42,B43,B45,B46,B48,B50,B51,B55,B56,B6,B60,B61,B62,B65,B66,B67,B70,B71,B72,B73,B74,B75,B76,B78,B79,B80,B82,B83,B84,B85,B86,B87,B91,B93,B94,B95,B96,B98,B99,C11,C14,C17,C19,C2,C20,C22,C23,C25,C27,C29,C3,C30,C31,C33,C34,C37,C38,C40,C46,C5,C51,C52,C54,C56,C57,C58,C59,C6,C62,C63,C64,C65,C67,C69,C7,C72,C73,C74,C76,C77,C8,C80,C81,C83,C84,C86,C87,C9,D1,D11,D2,D3,D4,D5,D8,D9
`Chr4:44422471`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	B65,C20
`Chr4:44422472`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	C20
`Chr4:44422490`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	C20
`Chr4:44422504`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	C20

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057807250.1

300 aa

150

300

Isy1

PF06246 Isy1 1-279 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057807250.1`	Pfam	`PF06246`	Isy1	Family	1	279	1e-93	314.3	Isy1-like splicing family

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

1 records

下载 cDNA FASTA

XM_057951267.1
CAATTTGTACCAAAATCGGAAGGCCCAAGATCCTAACCCGACTCGTGAAGCCTTCATCCAACGGCGTCGTTTGACCCATCTATAAATTTGTGATTTTAGAGCGAACTTCCTCGGATAATCGACATTCCACACTACTCACAAGAACTCAAAATTAGGGTTTATTCATCCTACCCAAAATCCTAATTCGTCCCCCATTCTTCCACCATGGCTCGAAACGAAGAGAAAGCGCAGTCCATGCTGAACCGTTTCATCACCATGAA...

CDS

1 records

下载 CDS FASTA

LOC131021926
ATGGCTCGAAACGAAGAGAAAGCGCAGTCCATGCTGAACCGTTTCATCACCATGAAAGAGGAGGAGAAGAAAAAGCCGAAGGAGCGCCGCCCCTACCTGGCGTCGGAGTGCCGCGACCTGGCGGAGGCCGACAAGTGGCGCCAGCAAATCATGCGCGAGATCGGCCGGAAAGTCGCTGAGATCCAGAACGAAGGCCTCGGAGAACACCGCCTCAGGGACCTGAACGACGAGATCAACAAGCTCATCCGAGAGAAGATGCA...

Protein

1 records

下载 Protein FASTA

XP_057807250.1
MARNEEKAQSMLNRFITMKEEEKKKPKERRPYLASECRDLAEADKWRQQIMREIGRKVAEIQNEGLGEHRLRDLNDEINKLIREKMHWERRIVELGGPNYSRHSAKMTDLDGNIVDVPNPSGRGPGYRYFGAAKKLPGVRELFEKPPELRKRRTRYDIYKRIDASYYGYRDDEDGILEKLEGPAEQKMRAAAVADWKEMEKIKQEARRAVKSGEVVEVGVVSKILFEEEEDVVEEERMKEKEKEEKEKEREFIAHVPLPD...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

下载 upstream 下载 downstream 下载 upstream + gene + downstream

JBrowse

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