当前解析结果
SmilChr04G002832| 统一新 Gene ID | SmilChr04G002832 |
|---|---|
| 名称 | SmilChr04G002832 |
| 描述 | nicastrin |
| 染色体 / SeqID | Chr04 / NC_080390.1 |
| 坐标与链方向 | 44431701 - 44440901 / + |
| NCBI Gene ID | LOC131021905 |
|---|---|
| GeneID | 131021905 |
| locus_tag | - |
| NCBI Name | LOC131021905 |
| 原始查询 | SmilChr04G002832 |
| 来源 | GFF basic annotation; NCBI GO GAF; KEGG smil; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | nicastrin |
| 产物 | nicastrin |
| Arabidopsis | AT3G52640 (AT3G52640)Zn-dependent exopeptidases superfamily protein [Source:NCBI gene (formerly Entrezgene);Acc:824430] identity=60.9; qcov=0.992; evalue=0; confidence=high |
| Rice | Os02g0736500- identity=55.9; qcov=1; evalue=0; confidence=high |
| GO | GO:0016020 (membrane); GO:0016485 (protein processing) |
| KEGG | smil04519 (Cadherin signaling - Salvia miltiorrhiza (redroot sage)) |
| Pfam | PF04389 (Peptidase_M28); PF05450 (Nicastrin); PF18266 (Ncstrn_small) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:131021905 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Golgi apparatus | 高尔基体 | 0.60000 | XP_057807224.1 |
| 2 | Vacuole | 液泡 | 0.60000 | XP_057807224.1 |
| 3 | Nucleus | 细胞核 | 0.00000 | XP_057807224.1 |
| 4 | Chromosome | 染色体 | 0.00000 | XP_057807224.1 |
| 5 | Centromere | 着丝粒 | 0.00000 | XP_057807224.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr4:44433845 |
G |
A |
EMS_canonical_SNV | CDS_variant | 5 | B117,B72,B80,C78,C85 |
Chr4:44434295 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B108 |
Chr4:44435436 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B117 |
Chr4:44437287 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | B84,C57 |
Chr4:44437344 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B40 |
Chr4:44439908 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B10 |
Chr4:44440066 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | B12,B94 |
Chr4:44440196 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | C23 |
Chr4:44440416 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | B84,C57 |
Chr4:44440458 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B108 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。
XP_057807224.1PF18266
Ncstrn_small 49-207 aa
PF04389
Peptidase_M28 246-453 aa
PF05450
Nicastrin 249-456 aa
XP_057807225.1PF18266
Ncstrn_small 49-206 aa
PF04389
Peptidase_M28 245-452 aa
PF05450
Nicastrin 248-455 aa
XP_057807226.1PF18266
Ncstrn_small 47-204 aa
PF04389
Peptidase_M28 243-450 aa
PF05450
Nicastrin 246-453 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057807224.1 |
Pfam | PF18266 |
Ncstrn_small | Domain | 49 | 207 | 2.1e-42 | 145.7 | Nicastrin small lobe |
XP_057807224.1 |
Pfam | PF04389 |
Peptidase_M28 | Domain | 246 | 453 | 2.3e-08 | 34.7 | Peptidase family M28 |
XP_057807224.1 |
Pfam | PF05450 |
Nicastrin | Domain | 249 | 456 | 9.3e-68 | 228.8 | Nicastrin large lobe |
XP_057807225.1 |
Pfam | PF18266 |
Ncstrn_small | Domain | 49 | 206 | 3.9e-44 | 151.4 | Nicastrin small lobe |
XP_057807225.1 |
Pfam | PF04389 |
Peptidase_M28 | Domain | 245 | 452 | 2.3e-08 | 34.7 | Peptidase family M28 |
XP_057807225.1 |
Pfam | PF05450 |
Nicastrin | Domain | 248 | 455 | 9.4e-68 | 228.7 | Nicastrin large lobe |
XP_057807226.1 |
Pfam | PF18266 |
Ncstrn_small | Domain | 47 | 204 | 3.8e-44 | 151.4 | Nicastrin small lobe |
XP_057807226.1 |
Pfam | PF04389 |
Peptidase_M28 | Domain | 243 | 450 | 2.2e-08 | 34.8 | Peptidase family M28 |
XP_057807226.1 |
Pfam | PF05450 |
Nicastrin | Domain | 246 | 453 | 9.3e-68 | 228.8 | Nicastrin large lobe |
每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
3 records
下载 cDNA FASTA3 records
下载 CDS FASTA3 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。